Variant report

Variant	rs2808362
Chromosome Location	chr9:109990674-109990675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10816473	0.84[AMR][1000 genomes]
rs10816474	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10816477	0.89[AMR][1000 genomes]
rs10816480	0.82[AMR][1000 genomes]
rs10978767	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10978775	0.85[AMR][1000 genomes]
rs12342066	0.85[AMR][1000 genomes]
rs12555417	0.82[AMR][1000 genomes]
rs1519049	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1519050	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2808363	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2808365	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28769087	0.82[AMR][1000 genomes]
rs28848858	0.82[AMR][1000 genomes]
rs7861304	0.81[AMR][1000 genomes]
rs7867544	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:109985000-109990800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:109989600-109991600	Enhancers	Fetal Intestine Large	intestine
3	chr9:109989600-109992000	Enhancers	Fetal Intestine Small	intestine
4	chr9:109989600-109992000	Enhancers	Fetal Lung	lung
5	chr9:109989600-109992200	Enhancers	Fetal Stomach	stomach
6	chr9:109989800-109991400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:109989800-109991800	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr9:109990000-109991000	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr9:109990000-109991200	Enhancers	HepG2	liver
10	chr9:109990000-109991600	Enhancers	Fetal Muscle Leg	muscle
11	chr9:109990000-109992000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:109990000-109993600	Weak transcription	Psoas Muscle	Psoas
13	chr9:109990200-109990800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr9:109990200-109991600	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr9:109990200-109991800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:109990200-109992000	Enhancers	Fetal Brain Female	brain
17	chr9:109990400-109991800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:109990400-109991800	Enhancers	Brain Germinal Matrix	brain
19	chr9:109990400-109992200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr9:109990600-109990800	Enhancers	Colonic Mucosa	Colon
21	chr9:109990600-109990800	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr9:109990600-109990800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
23	chr9:109990600-109991600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr9:109990600-109991600	Enhancers	Esophagus	oesophagus
25	chr9:109990600-109991800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr9:109990600-109991800	Enhancers	H9 Cell Line	embryonic stem cell
27	chr9:109990600-109992000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:109990600-109992000	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr9:109990600-109992200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr9:109990600-109992200	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr9:109990600-109992400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr9:109990600-109992400	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr9:109990600-109992600	Enhancers	Fetal Brain Male	brain
34	chr9:109990600-109997400	Weak transcription	Liver	Liver

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