Variant report

Variant	rs2808627
Chromosome Location	chr1:159669340-159669341
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10797052	0.87[ASN][1000 genomes]
rs10797053	0.87[ASN][1000 genomes]
rs12734169	0.85[ASN][1000 genomes]
rs2808630	0.89[ASN][1000 genomes]
rs2808634	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3116650	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3116652	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3122014	0.87[ASN][1000 genomes]
rs4420078	0.86[JPT][hapmap];0.87[YRI][hapmap]
rs4425982	0.87[ASN][1000 genomes]
rs876538	0.83[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	esv1816835	chr1:159635021-159678816	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1829893	chr1:159635021-159678816	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv3188	chr1:159635132-159676182	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159669200-159669600	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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