Variant report

Variant	rs2811889
Chromosome Location	chr1:59161508-59161509
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59149640..59151406-chr1:59161321..59163317,2	K562	blood:
2	chr1:59161094..59162595-chr1:59162952..59165856,2	MCF-7	breast:
3	chr1:59124310..59126934-chr1:59160369..59163254,2	K562	blood:
4	chr1:59161079..59162975-chr1:59176846..59178891,2	MCF-7	breast:
5	chr1:59155623..59158256-chr1:59160933..59162454,2	MCF-7	breast:
6	chr1:59160810..59163384-chr1:59173119..59175841,2	K562	blood:
7	chr1:58980558..58982758-chr1:59159727..59161929,2	K562	blood:

Variant related genes	Relation type
ENSG00000162601	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs232850	0.87[AMR][1000 genomes]
rs232868	1.00[AMR][1000 genomes]
rs232883	1.00[AMR][1000 genomes]
rs2746078	1.00[AMR][1000 genomes]
rs2746079	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2746080	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811859	1.00[AMR][1000 genomes]
rs2811864	0.81[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811892	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs471446	0.89[AMR][1000 genomes]
rs472129	0.89[AMR][1000 genomes]
rs489260	0.89[AMR][1000 genomes]
rs500863	0.89[AMR][1000 genomes]
rs504996	1.00[AMR][1000 genomes]
rs519331	0.89[AMR][1000 genomes]
rs522103	1.00[AMR][1000 genomes]
rs528387	0.89[AMR][1000 genomes]
rs528642	0.89[AMR][1000 genomes]
rs529289	0.89[AMR][1000 genomes]
rs553540	0.89[AMR][1000 genomes]
rs568320	0.89[AMR][1000 genomes]
rs583854	0.89[AMR][1000 genomes]
rs586509	0.89[AMR][1000 genomes]
rs595083	0.89[AMR][1000 genomes]
rs631352	0.89[AMR][1000 genomes]
rs646018	0.89[AMR][1000 genomes]
rs662989	0.89[AMR][1000 genomes]
rs674205	0.89[AMR][1000 genomes]
rs675496	0.89[AMR][1000 genomes]
rs675919	0.89[AMR][1000 genomes]
rs678233	0.89[AMR][1000 genomes]
rs678283	0.89[AMR][1000 genomes]
rs679619	0.89[AMR][1000 genomes]
rs688158	0.89[AMR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59118200-59163400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:59119800-59162200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:59119800-59163200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:59123800-59161800	Strong transcription	Dnd41	blood
5	chr1:59125000-59162200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:59139600-59162800	Weak transcription	Fetal Brain Male	brain
7	chr1:59139800-59162000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:59144600-59161800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:59146600-59163200	Strong transcription	Osteobl	bone
10	chr1:59148000-59164000	Weak transcription	A549	lung
11	chr1:59148200-59164400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:59151000-59163200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:59151800-59164400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:59152200-59163200	Strong transcription	Primary B cells from peripheral blood	blood
15	chr1:59153400-59162600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr1:59153600-59161800	Weak transcription	Fetal Heart	heart
17	chr1:59153600-59164400	Weak transcription	Right Atrium	heart
18	chr1:59153600-59164800	Weak transcription	Esophagus	oesophagus
19	chr1:59153800-59162000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:59153800-59164000	Weak transcription	Gastric	stomach
21	chr1:59153800-59165000	Weak transcription	Pancreas	Pancrea
22	chr1:59155200-59164400	Weak transcription	Hela-S3	cervix
23	chr1:59155200-59164600	Weak transcription	HSMMtube	muscle
24	chr1:59155400-59161800	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:59155400-59162600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr1:59156000-59162200	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr1:59156200-59162200	Strong transcription	Primary B cells from cord blood	blood
28	chr1:59157000-59162000	Strong transcription	K562	blood
29	chr1:59157000-59164200	Strong transcription	HSMM	muscle
30	chr1:59157600-59162000	Weak transcription	Ovary	ovary
31	chr1:59158000-59164000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr1:59159200-59164200	Weak transcription	Colonic Mucosa	Colon
33	chr1:59159400-59161600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr1:59159600-59164000	Weak transcription	Fetal Brain Female	brain
35	chr1:59159800-59161600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr1:59159800-59164200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr1:59159800-59164200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr1:59159800-59165000	Weak transcription	Small Intestine	intestine
39	chr1:59160000-59161800	Weak transcription	Brain Anterior Caudate	brain
40	chr1:59160000-59162000	Weak transcription	Colon Smooth Muscle	Colon
41	chr1:59160000-59162200	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr1:59160000-59164200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr1:59160000-59164200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr1:59160000-59164200	Weak transcription	HMEC	breast
45	chr1:59160000-59164200	Weak transcription	NHDF-Ad	bronchial
46	chr1:59160000-59164400	Weak transcription	Brain Germinal Matrix	brain
47	chr1:59160200-59161800	Weak transcription	Brain Angular Gyrus	brain
48	chr1:59160200-59162800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr1:59160200-59164200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr1:59160600-59161800	Weak transcription	Primary T cells from cord blood	blood

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