Variant report

Variant	rs2811909
Chromosome Location	chr9:86249298-86249299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86247178..86252278-chr9:86254565..86260519,7	MCF-7	breast:
2	chr9:86249075..86251124-chr9:86419195..86422058,2	K562	blood:
3	chr9:86241062..86243617-chr9:86248330..86250163,2	K562	blood:
4	chr9:86248664..86251363-chr9:86251483..86253533,2	MCF-7	breast:
5	chr9:86248086..86250305-chr9:86262008..86265514,3	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10115799	1.00[CHB][hapmap]
rs10119344	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10125432	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1035274	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1044175	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10746718	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10746719	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10746720	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10746721	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10780621	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10868040	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10868044	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10868045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11140198	0.85[CHB][hapmap]
rs11140209	0.84[CHB][hapmap]
rs11791175	0.85[CHB][hapmap]
rs1333863	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1333865	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1413293	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1537503	0.85[CHB][hapmap]
rs1572135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1889260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2058912	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2542776	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2780969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780975	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2780977	0.83[EUR][1000 genomes]
rs2780978	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2780979	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2780981	0.81[EUR][1000 genomes]
rs2780982	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2780995	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2781000	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2781003	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2811899	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2811900	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2811901	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2811902	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2811903	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2811905	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2811906	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2811912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811919	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2811921	0.85[CHB][hapmap]
rs2811923	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2811926	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2811927	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2811928	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2811929	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2811930	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2811931	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4146741	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4242623	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4454364	0.85[CHB][hapmap]
rs4877796	0.85[CHB][hapmap]
rs6559737	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7018643	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7023082	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7039019	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7865296	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7874980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs961807	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv516587	chr9:86226119-86255765	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv973848	chr9:86241130-86260149	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86238600-86265000	Weak transcription	Ovary	ovary
2	chr9:86238800-86254600	Weak transcription	Left Ventricle	heart
3	chr9:86238800-86260600	Weak transcription	Right Ventricle	heart
4	chr9:86238800-86264600	Weak transcription	Psoas Muscle	Psoas
5	chr9:86239000-86250000	Weak transcription	HSMMtube	muscle
6	chr9:86239000-86264800	Weak transcription	HMEC	breast
7	chr9:86239000-86265200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:86239200-86261000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:86239400-86254400	Weak transcription	Brain Anterior Caudate	brain
10	chr9:86239400-86254400	Weak transcription	Brain Substantia Nigra	brain
11	chr9:86239400-86266200	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:86239400-86266400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:86239600-86260800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr9:86239600-86260800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:86239600-86265000	Weak transcription	HUVEC	blood vessel
16	chr9:86239600-86266600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:86239600-86272200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:86239800-86266800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr9:86240200-86265000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr9:86240400-86254600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr9:86242200-86256600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:86242400-86253800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:86242400-86257000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr9:86242400-86264800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr9:86242600-86265000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr9:86243200-86260800	Weak transcription	Primary B cells from cord blood	blood
27	chr9:86243200-86261000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr9:86243200-86269600	Weak transcription	Pancreas	Pancrea
29	chr9:86243600-86264800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr9:86243600-86266200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr9:86244000-86260600	Weak transcription	Primary B cells from peripheral blood	blood
32	chr9:86244000-86260800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr9:86244200-86264600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr9:86244400-86254200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:86244400-86262200	Weak transcription	A549	lung
36	chr9:86244400-86264600	Weak transcription	NHLF	lung
37	chr9:86244600-86257600	Weak transcription	Lung	lung
38	chr9:86244600-86257800	Weak transcription	Primary T cells from cord blood	blood
39	chr9:86244600-86258000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr9:86244600-86260000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:86244600-86260200	Weak transcription	NHEK	skin
42	chr9:86244800-86254400	Weak transcription	HSMM	muscle
43	chr9:86244800-86258200	Weak transcription	GM12878-XiMat	blood
44	chr9:86244800-86260400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:86244800-86260800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr9:86244800-86261200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr9:86244800-86278800	Weak transcription	Spleen	Spleen
48	chr9:86244800-86285800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr9:86245000-86250600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr9:86245000-86252200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links