Variant report

Variant	rs2813925
Chromosome Location	chr1:62925365-62925366
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1168006	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1168007	0.87[ASW][hapmap];0.82[LWK][hapmap]
rs614636	0.87[ASW][hapmap];0.82[LWK][hapmap];1.00[MKK][hapmap]
rs631982	0.87[ASW][hapmap];0.82[LWK][hapmap];1.00[MKK][hapmap]
rs6587977	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817371	chr1:62901935-63129697	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62904200-62931400	Weak transcription	HSMMtube	muscle
2	chr1:62904200-62940000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:62904800-62931600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:62905400-62926800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:62907000-62928000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:62909800-62977000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:62910200-62936000	Weak transcription	Aorta	Aorta
8	chr1:62911400-62931400	Weak transcription	Fetal Brain Male	brain
9	chr1:62911600-62938000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:62912000-62931600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:62912200-62930400	Weak transcription	Ovary	ovary
12	chr1:62914400-62935400	Weak transcription	Brain Substantia Nigra	brain
13	chr1:62915400-62940800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:62915400-62966600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr1:62915600-62929800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:62915600-62930400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:62915800-62937000	Weak transcription	Esophagus	oesophagus
18	chr1:62916000-62940800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr1:62916000-62977200	Weak transcription	Right Ventricle	heart
20	chr1:62916200-62960000	Weak transcription	Spleen	Spleen
21	chr1:62916200-62963200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr1:62916400-62936000	Weak transcription	Left Ventricle	heart
23	chr1:62916400-62940800	Weak transcription	Fetal Heart	heart
24	chr1:62916400-62941400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr1:62916600-62935800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr1:62916600-62937000	Weak transcription	Colonic Mucosa	Colon
27	chr1:62916600-62976600	Weak transcription	Psoas Muscle	Psoas
28	chr1:62916800-62935800	Weak transcription	Colon Smooth Muscle	Colon
29	chr1:62917000-62941200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr1:62917200-62940800	Weak transcription	NHEK	skin
31	chr1:62917400-62940200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr1:62918800-62950000	Weak transcription	GM12878-XiMat	blood
33	chr1:62918800-62950800	Weak transcription	K562	blood
34	chr1:62919000-62959200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr1:62919400-62935800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:62919400-62935800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr1:62919400-62937000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr1:62919400-62940800	Weak transcription	NHLF	lung
39	chr1:62919800-62931000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:62919800-62931600	Weak transcription	Small Intestine	intestine
41	chr1:62919800-62937000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:62920000-62936200	Weak transcription	Gastric	stomach
43	chr1:62920000-62937000	Weak transcription	Pancreas	Pancrea
44	chr1:62920000-62971000	Weak transcription	Thymus	Thymus
45	chr1:62920000-62980200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr1:62920200-62931000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr1:62920200-62934800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr1:62920400-62930800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr1:62920600-62932000	Weak transcription	Fetal Kidney	kidney
50	chr1:62920600-62936000	Weak transcription	Rectal Smooth Muscle	rectum

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