Variant report
| Variant | rs2814497 |
|---|---|
| Chromosome Location | chr1:220456926-220456927 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000118873 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10495146 | 0.81[CEU][hapmap] |
| rs11812073 | 0.82[CEU][hapmap] |
| rs1397959 | 0.81[CEU][hapmap] |
| rs1397960 | 0.81[CEU][hapmap] |
| rs2048479 | 0.81[CEU][hapmap] |
| rs2137114 | 0.82[CEU][hapmap] |
| rs2808020 | 0.92[ASN][1000 genomes] |
| rs4846313 | 0.80[CEU][hapmap] |
| rs6541131 | 0.82[CEU][hapmap] |
| rs6541132 | 0.80[CEU][hapmap] |
| rs6541137 | 0.80[CEU][hapmap] |
| rs6657742 | 0.82[CEU][hapmap] |
| rs6662971 | 0.82[CEU][hapmap] |
| rs6673482 | 0.82[CEU][hapmap] |
| rs6683491 | 0.81[CEU][hapmap] |
| rs7545196 | 0.81[CEU][hapmap] |
| rs7548665 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs907416 | 0.90[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001681 | chr1:220425057-220548325 | Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv535298 | chr1:220425057-220548325 | Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:220455800-220457600 | Enhancers | Cortex derived primary cultured neurospheres | brain |
