Variant report

Variant	rs2814765
Chromosome Location	chr1:159064246-159064247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2078724	1.00[ASN][1000 genomes]
rs2518561	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2814756	1.00[ASN][1000 genomes]
rs2814762	1.00[ASN][1000 genomes]
rs2852721	1.00[ASN][1000 genomes]
rs73023736	1.00[ASN][1000 genomes]
rs855873	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159062400-159064800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:159062600-159064400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:159062600-159064600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:159062600-159064800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:159062600-159064800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:159062600-159064800	Weak transcription	NHDF-Ad	bronchial
7	chr1:159062600-159064800	Weak transcription	Osteobl	bone
8	chr1:159062600-159065000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:159062800-159065800	Weak transcription	HUVEC	blood vessel
10	chr1:159063200-159065200	Weak transcription	NHEK	skin
11	chr1:159063400-159065000	Weak transcription	HMEC	breast
12	chr1:159063400-159065200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:159063400-159067000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr1:159063400-159067000	Weak transcription	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links