Variant report

Variant	rs2814887
Chromosome Location	chr6:38518879-38518880
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38517461..38519604-chr6:38521981..38524241,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1073900	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947749	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947750	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154188	0.81[CEU][hapmap]
rs12193868	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198294	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199427	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12206371	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1699015	0.88[CEU][hapmap]
rs1699018	0.88[CEU][hapmap]
rs1781740	0.88[CEU][hapmap]
rs1781742	0.92[CEU][hapmap]
rs2748156	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2748161	0.97[EUR][1000 genomes]
rs2748173	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2814882	0.97[EUR][1000 genomes]
rs2814890	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074421	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4236061	0.94[EUR][1000 genomes]
rs4254983	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55869483	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56083119	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56250767	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458060	0.88[CEU][hapmap]
rs6924443	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs72853429	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7743871	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752239	0.81[CEU][hapmap]
rs7761154	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7767041	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38494400-38524200	Weak transcription	Aorta	Aorta
2	chr6:38494800-38522600	Weak transcription	Ovary	ovary
3	chr6:38495000-38521800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:38496600-38539600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:38496800-38521600	Weak transcription	Lung	lung
6	chr6:38497000-38538800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:38497000-38539400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:38500800-38520800	Weak transcription	Fetal Intestine Small	intestine
9	chr6:38508200-38522200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:38510200-38522200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:38510400-38522600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:38510600-38546800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:38511600-38522800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:38512200-38519000	Weak transcription	Fetal Intestine Large	intestine
15	chr6:38512200-38519000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:38512400-38519400	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:38513000-38522400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:38513000-38539200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:38514200-38539400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:38515600-38535800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:38516000-38538800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:38517400-38519600	Weak transcription	GM12878-XiMat	blood
23	chr6:38517800-38519000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr6:38517800-38519400	Weak transcription	Small Intestine	intestine
25	chr6:38517800-38519400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr6:38517800-38519800	Weak transcription	Fetal Heart	heart
27	chr6:38517800-38535000	Weak transcription	Brain Substantia Nigra	brain
28	chr6:38518000-38519600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:38518000-38522200	Weak transcription	HSMMtube	muscle
30	chr6:38518400-38520600	Enhancers	Primary B cells from cord blood	blood
31	chr6:38518600-38519200	Strong transcription	Primary T cells from cord blood	blood
32	chr6:38518600-38519200	Enhancers	Left Ventricle	heart
33	chr6:38518600-38521200	Enhancers	Primary B cells from peripheral blood	blood
34	chr6:38518800-38521200	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links