Variant report

Variant	rs2815033
Chromosome Location	chr6:39241686-39241687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39240488..39242738-chr6:39266250..39269664,3	MCF-7	breast:
2	chr6:39239173..39241787-chr6:39269864..39271484,2	MCF-7	breast:
3	chr6:39240523..39244812-chr6:39255962..39259170,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11759627	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961538	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2758870	0.95[EUR][1000 genomes]
rs2758873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2758879	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2758880	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2758886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2758896	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2758902	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2758903	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2758905	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815034	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815043	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815047	1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815059	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815060	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815062	0.95[EUR][1000 genomes]
rs4711589	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55804343	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55812552	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55889689	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56011317	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56300329	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852940	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39238400-39243200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:39238600-39243000	Weak transcription	Spleen	Spleen
3	chr6:39239400-39242600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:39239600-39242600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:39239800-39242000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:39240000-39241800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:39240000-39242200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:39240200-39241800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:39240400-39250200	Enhancers	Stomach Mucosa	stomach
10	chr6:39241000-39242000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:39241200-39241800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:39241200-39241800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:39241200-39242000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:39241200-39242000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:39241200-39242000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:39241200-39242000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr6:39241200-39242200	Enhancers	Colonic Mucosa	Colon
18	chr6:39241200-39242600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:39241200-39243000	Enhancers	Placenta	Placenta
20	chr6:39241400-39241800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr6:39241400-39242000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:39241400-39242000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr6:39241600-39241800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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