Variant report

Variant	rs2815096
Chromosome Location	chr6:39158172-39158173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:39156644..39158244-chr6:39161894..39164372,2	MCF-7	breast:
2	chr6:39152659..39161573-chr6:39191951..39198831,12	K562	blood:
3	chr6:39155353..39158584-chr6:39158946..39166191,7	K562	blood:
4	chr6:39157780..39158306-chr6:39270573..39271483,2	MCF-7	breast:
5	chr6:39155493..39158185-chr6:39159701..39165340,4	K562	blood:
6	chr6:39157672..39158680-chr6:39270783..39271927,3	MCF-7	breast:
7	chr6:39154121..39155675-chr6:39156063..39158781,2	K562	blood:
8	chr6:39154908..39158754-chr6:39195824..39198738,4	K562	blood:
9	chr6:39150201..39152750-chr6:39156185..39158678,2	K562	blood:
10	chr6:39156141..39158653-chr6:39184593..39186726,2	MCF-7	breast:
11	chr6:39151433..39153094-chr6:39157185..39159082,2	MCF-7	breast:
12	chr6:39156673..39159411-chr6:39170742..39172943,2	K562	blood:
13	chr6:39134185..39134967-chr6:39157641..39158358,3	MCF-7	breast:
14	chr6:39157450..39158365-chr6:39269553..39270301,2	MCF-7	breast:
15	chr6:39156367..39160126-chr6:39192413..39195568,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164626	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1465569	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2561424	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2561426	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2561427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs890923	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39146200-39160400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:39149000-39168000	Weak transcription	Fetal Kidney	kidney
3	chr6:39150000-39158800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:39150600-39193800	Genic enhancers	Fetal Intestine Small	intestine
5	chr6:39150800-39158400	Enhancers	Stomach Mucosa	stomach
6	chr6:39151000-39165200	Strong transcription	H9 Cell Line	embryonic stem cell
7	chr6:39151400-39162200	Weak transcription	Thymus	Thymus
8	chr6:39151600-39161000	Strong transcription	Fetal Stomach	stomach
9	chr6:39153200-39162000	Genic enhancers	Placenta	Placenta
10	chr6:39154200-39159800	Enhancers	Fetal Muscle Trunk	muscle
11	chr6:39154200-39164200	Genic enhancers	Fetal Intestine Large	intestine
12	chr6:39154400-39162400	Weak transcription	Hela-S3	cervix
13	chr6:39154400-39164400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:39155400-39158600	Enhancers	Fetal Muscle Leg	muscle
15	chr6:39155400-39172400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:39155600-39164000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:39155600-39166600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:39155800-39158400	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:39155800-39160400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:39156000-39160400	Weak transcription	Brain Substantia Nigra	brain
21	chr6:39156200-39158400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:39156200-39158800	Genic enhancers	K562	blood
23	chr6:39156200-39159400	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:39156200-39164200	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:39156400-39158800	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr6:39156400-39158800	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr6:39156400-39177200	Weak transcription	Primary T cells from cord blood	blood
28	chr6:39156600-39160600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:39156600-39161000	Weak transcription	Fetal Lung	lung
30	chr6:39156600-39164200	Weak transcription	HSMMtube	muscle
31	chr6:39156600-39169600	Weak transcription	A549	lung
32	chr6:39156800-39158200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:39156800-39158600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr6:39156800-39158600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:39156800-39158600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr6:39156800-39158800	Genic enhancers	Colonic Mucosa	Colon
37	chr6:39156800-39165200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:39156800-39166000	Weak transcription	Small Intestine	intestine
39	chr6:39156800-39166200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr6:39156800-39171200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr6:39156800-39193400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr6:39157000-39158200	Genic enhancers	Esophagus	oesophagus
43	chr6:39157000-39159200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:39157000-39159800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:39157000-39164800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr6:39157200-39161200	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:39157200-39163800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:39157200-39163800	Genic enhancers	Duodenum Mucosa	Duodenum
49	chr6:39157200-39163800	Strong transcription	Gastric	stomach
50	chr6:39157400-39158200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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