Variant report

Variant	rs2815804
Chromosome Location	chr6:36109010-36109011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36108837..36110451-chr6:36310627..36312138,2	K562	blood:
2	chr6:36105269..36110195-chr6:36162724..36166768,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246982	Chromatin interaction
ENSG00000096070	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2071864	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2815807	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2815812	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2859129	0.83[EUR][1000 genomes]
rs2859131	0.83[EUR][1000 genomes]
rs2859133	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4713933	0.83[EUR][1000 genomes]
rs9394331	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36099200-36117400	Weak transcription	Psoas Muscle	Psoas
2	chr6:36099800-36113400	Weak transcription	Right Atrium	heart
3	chr6:36100000-36109600	Weak transcription	Brain Anterior Caudate	brain
4	chr6:36100200-36111000	Weak transcription	Adipose Nuclei	Adipose
5	chr6:36100200-36111000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:36100200-36115000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:36100400-36109400	Weak transcription	Osteobl	bone
8	chr6:36100400-36117400	Weak transcription	Fetal Lung	lung
9	chr6:36100400-36118600	Weak transcription	Small Intestine	intestine
10	chr6:36100600-36110000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:36100800-36114600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:36101200-36129400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:36101400-36114600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:36102000-36110200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:36104200-36110200	Weak transcription	NHEK	skin
16	chr6:36104600-36111200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:36104800-36109800	Weak transcription	GM12878-XiMat	blood
18	chr6:36104800-36114600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:36105400-36110200	Strong transcription	Primary B cells from peripheral blood	blood
20	chr6:36106400-36110200	Weak transcription	NHLF	lung
21	chr6:36106600-36110200	Strong transcription	Fetal Intestine Large	intestine
22	chr6:36106600-36112400	Strong transcription	Fetal Intestine Small	intestine
23	chr6:36106800-36110400	Genic enhancers	Primary T cells fromperipheralblood	blood
24	chr6:36107200-36111200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:36107400-36109200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr6:36107400-36112000	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr6:36107600-36109200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:36107600-36109600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:36107600-36110000	Weak transcription	Thymus	Thymus
30	chr6:36107600-36112000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr6:36107600-36112800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:36107600-36113000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:36107600-36114800	Weak transcription	Spleen	Spleen
34	chr6:36107800-36109400	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:36107800-36109600	Enhancers	Fetal Thymus	thymus
36	chr6:36107800-36111200	Weak transcription	Gastric	stomach
37	chr6:36107800-36115600	Weak transcription	Brain Angular Gyrus	brain
38	chr6:36108000-36110400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:36108000-36111400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:36108200-36109200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:36108200-36110800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:36108200-36111000	Weak transcription	Esophagus	oesophagus
43	chr6:36108200-36111200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr6:36108200-36111400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:36108200-36114800	Weak transcription	HepG2	liver
46	chr6:36108400-36109600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:36108400-36110200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:36108400-36110400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:36108400-36111000	Weak transcription	Pancreas	Pancrea
50	chr6:36108400-36111600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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