Variant report

Variant	rs2817527
Chromosome Location	chr8:132327107-132327108
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EFR3A-1	chr8:132327084-132327225	NONHSAT129174

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10134127	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10141379	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10142882	0.82[ASN][1000 genomes]
rs10147858	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10467720	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10782412	0.81[EUR][1000 genomes]
rs11847234	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12896331	0.82[EUR][1000 genomes]
rs1472242	0.84[ASN][1000 genomes]
rs1494082	0.83[EUR][1000 genomes]
rs1494086	0.85[ASN][1000 genomes]
rs1494091	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1602993	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1869099	0.82[ASN][1000 genomes]
rs2045745	0.81[EUR][1000 genomes]
rs2123128	0.82[ASN][1000 genomes]
rs2167583	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2220812	0.86[ASN][1000 genomes]
rs2642088	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2817536	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28794287	0.82[ASN][1000 genomes]
rs3007060	0.83[ASN][1000 genomes]
rs360181	0.81[ASN][1000 genomes]
rs360182	0.81[ASN][1000 genomes]
rs360184	0.81[EUR][1000 genomes]
rs360193	0.81[EUR][1000 genomes]
rs414929	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4459473	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61991115	0.82[ASN][1000 genomes]
rs7156303	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72674735	0.82[ASN][1000 genomes]
rs8003496	0.84[ASN][1000 genomes]
rs8011552	0.82[ASN][1000 genomes]
rs8014441	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8015548	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1026579	chr8:131922531-132695045	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv491831	chr8:132161619-132539748	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1028783	chr8:132261833-132345698	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv523000	chr8:132304508-132329300	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv521358	chr8:132304508-132352151	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:132322800-132331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:132324600-132328000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:132324800-132327800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:132324800-132330000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:132325400-132328000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:132325600-132329600	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:132325600-132330200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:132326000-132330800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:132326200-132328000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:132326200-132328200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr8:132326400-132327800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:132326400-132327800	Weak transcription	Primary monocytes fromperipheralblood	blood

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