Variant report

Variant	rs2817723
Chromosome Location	chr6:24899568-24899569
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24898963..24900824-chr6:24901479..24903899,3	K562	blood:
2	chr6:24898963..24900824-chr6:24901479..24903899,2	K562	blood:
3	chr6:24895200..24897820-chr6:24899260..24901448,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2747677	0.82[CEU][hapmap];0.91[CHB][hapmap];0.81[EUR][1000 genomes]
rs2747683	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2817718	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817720	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2817722	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs2817724	0.89[ASN][1000 genomes]
rs2817725	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2817726	0.80[ASN][1000 genomes]
rs734014	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734015	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24876000-24901800	Weak transcription	Spleen	Spleen
2	chr6:24878400-24899800	Weak transcription	Thymus	Thymus
3	chr6:24882400-24904000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:24884000-24908200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:24884200-24899800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:24887000-24900000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:24889400-24899800	Weak transcription	Brain Anterior Caudate	brain
8	chr6:24889600-24899600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:24889600-24900000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:24890600-24900800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:24891000-24902800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr6:24891600-24901400	Weak transcription	GM12878-XiMat	blood
13	chr6:24891600-24901800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:24891600-24908400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:24892000-24900200	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:24894800-24900000	Weak transcription	Fetal Thymus	thymus
17	chr6:24896400-24902600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
18	chr6:24896400-24908600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr6:24897000-24899800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:24897200-24900000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:24897400-24899800	Genic enhancers	Primary T cells from cord blood	blood
22	chr6:24897400-24901200	Enhancers	Fetal Brain Male	brain
23	chr6:24897400-24901400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr6:24897400-24903800	Genic enhancers	Primary B cells from cord blood	blood
25	chr6:24897400-24904800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:24897400-24907600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:24897400-24909600	Genic enhancers	Primary B cells from peripheral blood	blood
28	chr6:24897800-24899800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:24897800-24899800	Weak transcription	Fetal Heart	heart
30	chr6:24897800-24900000	Weak transcription	Psoas Muscle	Psoas
31	chr6:24897800-24900000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:24897800-24901400	Weak transcription	HSMM	muscle
33	chr6:24898000-24899600	Weak transcription	Fetal Brain Female	brain
34	chr6:24898000-24899600	Weak transcription	HSMMtube	muscle
35	chr6:24898000-24900400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:24898400-24899800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:24898400-24900000	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr6:24898400-24903800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:24898600-24899800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:24898600-24900400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:24898600-24901800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:24898800-24900600	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr6:24898800-24904200	Enhancers	NHDF-Ad	bronchial
44	chr6:24899000-24900400	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr6:24899000-24904400	Weak transcription	Stomach Mucosa	stomach
46	chr6:24899000-24908200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:24899200-24900200	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr6:24899200-24900400	Enhancers	H1 Cell Line	embryonic stem cell
49	chr6:24899200-24900400	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr6:24899200-24900400	Genic enhancers	Primary hematopoietic stem cells	blood

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