Variant report

Variant	rs2818916
Chromosome Location	chr10:44546022-44546023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44543939..44546432-chr10:44546578..44548267,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1492705	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2639468	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2639469	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44538200-44547000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44539400-44546800	Weak transcription	Right Ventricle	heart
3	chr10:44541200-44549800	Weak transcription	Left Ventricle	heart
4	chr10:44542200-44546600	Weak transcription	Fetal Brain Male	brain
5	chr10:44542200-44547000	Weak transcription	Right Atrium	heart
6	chr10:44542400-44547000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:44542400-44547000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:44542400-44552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:44542600-44546200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:44542600-44546600	Weak transcription	Aorta	Aorta
11	chr10:44542600-44546600	Weak transcription	Osteobl	bone
12	chr10:44542600-44546800	Weak transcription	NHDF-Ad	bronchial
13	chr10:44542800-44546600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:44542800-44546600	Weak transcription	NHEK	skin
15	chr10:44543000-44546400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:44543200-44546400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:44543200-44547000	Weak transcription	Esophagus	oesophagus
18	chr10:44543200-44552400	Weak transcription	Gastric	stomach
19	chr10:44543400-44546600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr10:44544400-44546400	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:44544400-44548000	Enhancers	Fetal Muscle Leg	muscle
22	chr10:44544800-44547200	Enhancers	Fetal Heart	heart
23	chr10:44544800-44548600	Enhancers	Pancreas	Pancrea
24	chr10:44545600-44546200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr10:44545800-44546200	Weak transcription	Ovary	ovary
26	chr10:44546000-44548000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links