Variant report

Variant	rs2820236
Chromosome Location	chr6:34985800-34985801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34981452..34983492-chr6:34985048..34986819,2	K562	blood:
2	chr6:34960537..34962092-chr6:34983517..34986049,2	K562	blood:
3	chr6:34976217..34981550-chr6:34982184..34986897,6	K562	blood:
4	chr6:34976709..34980316-chr6:34984375..34986897,3	K562	blood:
5	chr6:34981992..34984484-chr6:34985319..34987073,2	K562	blood:
6	chr6:34984374..34990603-chr6:34991816..34996687,6	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2820238	1.00[AFR][1000 genomes]
rs2820241	1.00[AFR][1000 genomes]
rs2820242	1.00[AFR][1000 genomes]
rs4646911	1.00[AFR][1000 genomes]
rs56213928	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:129 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34926800-34992200	Weak transcription	Small Intestine	intestine
2	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:34960200-34988200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:34963000-34987800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:34963000-34989400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:34963600-34990000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:34963600-35006600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:34971000-34988400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:34979800-34990800	Weak transcription	K562	blood
10	chr6:34979800-35002000	Weak transcription	GM12878-XiMat	blood
11	chr6:34982800-34991800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:34982800-34992200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:34983000-34991800	Weak transcription	HMEC	breast
14	chr6:34983400-34987800	Enhancers	Fetal Heart	heart
15	chr6:34983600-34992000	Weak transcription	A549	lung
16	chr6:34983800-34985800	Enhancers	NH-A	brain
17	chr6:34983800-34992200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr6:34984200-34987200	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr6:34984400-34986000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:34984400-34986000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:34984400-34986000	Flanking Active TSS	NHLF	lung
22	chr6:34984400-34986600	Active TSS	Colon Smooth Muscle	Colon
23	chr6:34984400-34987200	Flanking Active TSS	HUVEC	blood vessel
24	chr6:34984400-34987400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:34984600-34986000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:34984600-34986000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr6:34984600-34986200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr6:34984600-34986200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr6:34984600-34986200	Flanking Active TSS	HSMM	muscle
30	chr6:34984600-34987600	Active TSS	Aorta	Aorta
31	chr6:34984600-34988200	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr6:34984800-34985800	Flanking Active TSS	NHDF-Ad	bronchial
33	chr6:34984800-34986000	Flanking Active TSS	Fetal Muscle Leg	muscle
34	chr6:34984800-34987000	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr6:34984800-34987000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:34984800-34987200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr6:34984800-34987800	Active TSS	Rectal Smooth Muscle	rectum
38	chr6:34984800-34989600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:34984800-34991000	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:34985000-34987600	Strong transcription	Fetal Brain Female	brain
41	chr6:34985000-34987800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:34985000-34988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:34985000-34990800	Strong transcription	Primary T cells from cord blood	blood
44	chr6:34985000-34991400	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr6:34985200-34986000	Flanking Active TSS	Liver	Liver
46	chr6:34985200-34986000	Transcr. at gene 5' and 3'	Colonic Mucosa	Colon
47	chr6:34985200-34986000	Transcr. at gene 5' and 3'	Esophagus	oesophagus
48	chr6:34985200-34986000	Flanking Active TSS	Psoas Muscle	Psoas
49	chr6:34985200-34986000	Enhancers	Osteobl	bone
50	chr6:34985200-34986200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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