Variant report

Variant	rs2821245
Chromosome Location	chr1:72578695-72578696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10889943	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1194256	1.00[YRI][hapmap]
rs1194266	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1194268	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1194272	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1194274	0.83[AMR][1000 genomes]
rs1194279	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1194280	0.83[AMR][1000 genomes]
rs1194285	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1211567	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1211923	0.84[EUR][1000 genomes]
rs1675351	0.84[EUR][1000 genomes]
rs1675353	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1675354	0.84[EUR][1000 genomes]
rs1675355	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1776015	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2630393	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2630396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2630426	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2630427	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2630428	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2630429	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2630430	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2630432	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2630433	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2630436	0.95[EUR][1000 genomes]
rs2630437	0.95[EUR][1000 genomes]
rs2821237	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2821238	0.95[EUR][1000 genomes]
rs2821241	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2821243	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2821249	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2821283	0.84[EUR][1000 genomes]
rs2821284	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2821287	0.84[EUR][1000 genomes]
rs2821289	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2821290	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2821291	1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2821299	0.84[EUR][1000 genomes]
rs2821300	0.84[EUR][1000 genomes]
rs4344270	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56256157	0.95[EUR][1000 genomes]
rs72680874	0.94[EUR][1000 genomes]
rs72680879	0.94[EUR][1000 genomes]
rs9425076	0.84[EUR][1000 genomes]
rs9425080	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916783	chr1:72196061-72707953	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1007073	chr1:72419858-72734657	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1006076	chr1:72477436-72700903	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv534996	chr1:72477436-72700903	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv428454	chr1:72504469-72926256	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv870851	chr1:72533927-72611715	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv1013256	chr1:72541220-72620102	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	nsv461906	chr1:72549836-72683226	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
9	nsv461917	chr1:72549836-72683226	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
10	nsv546480	chr1:72549836-72683226	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
11	nsv870742	chr1:72552322-72611715	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
12	nsv461928	chr1:72555489-72683226	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
13	nsv546481	chr1:72555489-72683226	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
14	nsv461939	chr1:72555489-72717743	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv546482	chr1:72555489-72717743	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72575800-72580200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:72578000-72580400	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links