Variant report

Variant	rs2822430
Chromosome Location	chr21:15516330-15516331
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RBM11-2	chr21:15515902-15516479	NONHSAT081148

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10854278	0.82[ASN][1000 genomes]
rs10854279	0.84[ASN][1000 genomes]
rs10854284	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11087909	0.84[ASN][1000 genomes]
rs11087910	0.84[ASN][1000 genomes]
rs12151976	0.84[ASN][1000 genomes]
rs12483211	0.84[ASN][1000 genomes]
rs12483328	0.84[ASN][1000 genomes]
rs12483373	0.84[ASN][1000 genomes]
rs2155969	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2187063	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2187064	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2226731	0.84[ASN][1000 genomes]
rs2246835	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2263412	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2822399	0.88[ASN][1000 genomes]
rs2822400	0.88[ASN][1000 genomes]
rs2822401	0.88[ASN][1000 genomes]
rs2822402	0.88[ASN][1000 genomes]
rs2822411	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2822413	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2822429	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28575716	0.84[ASN][1000 genomes]
rs4816941	0.84[ASN][1000 genomes]
rs4816942	0.82[ASN][1000 genomes]
rs4816945	0.84[ASN][1000 genomes]
rs55774504	0.88[ASN][1000 genomes]
rs55930907	0.82[ASN][1000 genomes]
rs56809490	0.84[ASN][1000 genomes]
rs56964975	0.84[ASN][1000 genomes]
rs58814444	0.84[ASN][1000 genomes]
rs59363534	0.84[ASN][1000 genomes]
rs60702377	0.84[ASN][1000 genomes]
rs62208573	0.84[ASN][1000 genomes]
rs62208575	0.84[ASN][1000 genomes]
rs62208584	0.84[ASN][1000 genomes]
rs62208585	0.84[ASN][1000 genomes]
rs62208586	0.84[ASN][1000 genomes]
rs62208587	0.84[ASN][1000 genomes]
rs62208588	0.84[ASN][1000 genomes]
rs62208589	0.84[ASN][1000 genomes]
rs6516610	0.84[ASN][1000 genomes]
rs7275860	0.84[ASN][1000 genomes]
rs7275968	0.84[ASN][1000 genomes]
rs7276424	0.84[ASN][1000 genomes]
rs7276925	0.84[ASN][1000 genomes]
rs7277769	0.84[ASN][1000 genomes]
rs7280792	0.84[ASN][1000 genomes]
rs7281456	0.84[ASN][1000 genomes]
rs7281918	0.84[ASN][1000 genomes]
rs7282128	0.84[ASN][1000 genomes]
rs8126892	0.84[ASN][1000 genomes]
rs8131762	0.84[ASN][1000 genomes]
rs914111	0.91[ASN][1000 genomes]
rs9789885	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058202	chr21:14706767-15628668	Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv1058072	chr21:15372509-15568171	Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1056787	chr21:15407504-15530291	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1827667	chr21:15442582-15521121	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv869466	chr21:15482572-15683385	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1065433	chr21:15484229-15528702	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv913400	chr21:15491773-15576536	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv587043	chr21:15501522-15550435	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv913401	chr21:15504006-15576536	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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