Variant report

Variant	rs2822572
Chromosome Location	chr21:15696202-15696203
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10482853	0.80[CEU][hapmap]
rs11701399	0.82[JPT][hapmap]
rs1297121	0.80[ASN][1000 genomes]
rs1297122	0.80[ASN][1000 genomes]
rs1297152	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs1317731	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2822567	0.93[GIH][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2822568	0.80[CEU][hapmap]
rs2822574	0.83[CEU][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];0.86[LWK][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap]
rs7275347	0.80[CEU][hapmap];1.00[MEX][hapmap]
rs8131875	0.83[JPT][hapmap]
rs875138	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs954616	0.91[JPT][hapmap]
rs9975944	0.81[GIH][hapmap];0.83[JPT][hapmap]
rs9977940	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9980502	0.81[ASN][1000 genomes]
rs9982421	0.93[ASN][1000 genomes]
rs9982878	0.81[CEU][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066930	chr21:15626232-15724630	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv459095	chr21:15626660-15698808	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv587044	chr21:15626660-15698808	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv470878	chr21:15630812-15698808	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1064554	chr21:15676222-15809321	Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv518723	chr21:15693476-15696271	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv517231	chr21:15696202-15696271	Inactive region	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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