Variant report

Variant	rs2822805
Chromosome Location	chr21:15973793-15973794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:15972571..15974778-chr21:15975655..15979189,4	K562	blood:
2	chr21:15962990..15965815-chr21:15973045..15978585,5	K562	blood:
3	chr21:15963141..15965075-chr21:15973045..15976364,4	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2822806	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15969200-15975000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr21:15970400-15974200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr21:15971000-15974600	Weak transcription	Primary B cells from cord blood	blood
4	chr21:15971000-15974800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr21:15971800-15974600	Enhancers	Dnd41	blood
6	chr21:15972200-15974800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr21:15972400-15974600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr21:15972800-15975600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr21:15973000-15974600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr21:15973000-15974800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr21:15973200-15974800	Enhancers	Primary T cells from cord blood	blood
12	chr21:15973400-15973800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr21:15973400-15973800	Enhancers	Fetal Muscle Leg	muscle
14	chr21:15973400-15974000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr21:15973400-15974000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr21:15973400-15974000	Enhancers	Fetal Lung	lung
17	chr21:15973400-15974200	Enhancers	Fetal Stomach	stomach
18	chr21:15973400-15974800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr21:15973400-15974800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr21:15973400-15974800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr21:15973400-15974800	Enhancers	K562	blood
22	chr21:15973600-15974400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr21:15973600-15974800	Weak transcription	Rectal Smooth Muscle	rectum

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