Variant report

Variant	rs2822828
Chromosome Location	chr21:16050920-16050921
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16045852..16052768-chr21:16052792..16061174,10	K562	blood:
2	chr21:16044097..16046561-chr21:16049201..16052244,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1037807	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12162546	0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs12482612	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13052089	0.88[ASN][1000 genomes]
rs1380450	0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs1977016	0.85[ASN][1000 genomes]
rs2017388	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2125755	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2822809	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs411100	0.85[ASN][1000 genomes]
rs439328	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs456872	0.85[ASN][1000 genomes]
rs458143	0.82[JPT][hapmap]
rs459879	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs461178	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs461853	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs465122	0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs4816351	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7277303	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs995045	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16049000-16052200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr21:16049000-16058400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr21:16049400-16051000	Flanking Active TSS	K562	blood
4	chr21:16049400-16051200	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr21:16049600-16054600	Weak transcription	HUVEC	blood vessel
6	chr21:16050000-16057800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr21:16050200-16055400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr21:16050400-16051000	Enhancers	Dnd41	blood
9	chr21:16050400-16051200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
10	chr21:16050600-16051000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr21:16050600-16055200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr21:16050600-16057800	Weak transcription	Primary T cells from cord blood	blood
13	chr21:16050800-16051000	Enhancers	Fetal Thymus	thymus
14	chr21:16050800-16051600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr21:16050800-16052000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr21:16050800-16052200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr21:16050800-16053600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr21:16050800-16054200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr21:16050800-16055400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr21:16050800-16055600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr21:16050800-16058000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr21:16050800-16058800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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