Variant report

No.	Distal block	Cell Line	Cell type
1	chr21:16052972..16056620-chr21:16062955..16066551,4	K562	blood:
2	chr21:16052375..16054861-chr21:16062775..16064860,2	MCF-7	breast:
3	chr21:16053256..16056620-chr21:16063550..16066551,3	K562	blood:
4	chr21:16061013..16064553-chr21:16067627..16071419,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1155418	0.95[ASN][1000 genomes]
rs12627144	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12627250	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13050099	0.84[ASN][1000 genomes]
rs13051994	0.84[ASN][1000 genomes]
rs13052422	0.84[ASN][1000 genomes]
rs2403801	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822839	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2822840	0.84[ASN][1000 genomes]
rs2822841	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2822842	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2822843	0.83[ASN][1000 genomes]
rs2822846	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2822847	0.84[ASN][1000 genomes]
rs2822848	0.84[ASN][1000 genomes]
rs2822849	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2822872	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs35297539	0.84[ASN][1000 genomes]
rs35531966	0.84[ASN][1000 genomes]
rs3848845	0.84[ASN][1000 genomes]
rs3848846	0.84[ASN][1000 genomes]
rs3859695	0.84[ASN][1000 genomes]
rs3859696	0.81[ASN][1000 genomes]
rs4591420	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs56901589	0.92[ASN][1000 genomes]
rs59348869	0.83[ASN][1000 genomes]
rs62227274	0.84[ASN][1000 genomes]
rs73182412	0.88[ASN][1000 genomes]
rs8130759	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs9680165	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16060200-16066400	Weak transcription	K562	blood
2	chr21:16060400-16064400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr21:16062800-16064800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr21:16062800-16064800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr21:16063200-16064600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr21:16063200-16064800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr21:16063200-16065400	Enhancers	Dnd41	blood
8	chr21:16063400-16064400	Enhancers	Hela-S3	cervix
9	chr21:16063600-16064200	Enhancers	Primary B cells from cord blood	blood
10	chr21:16064000-16064400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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