Variant report

Variant	rs2823140
Chromosome Location	chr21:16578800-16578801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:16534393..16538479-chr21:16576836..16579884,4	MCF-7	breast:
2	chr21:16577448..16580419-chr21:16741231..16743015,2	MCF-7	breast:
3	chr21:16577077..16584288-chr21:16662087..16667374,8	MCF-7	breast:
4	chr21:16543825..16546494-chr21:16577749..16579512,2	MCF-7	breast:
5	chr21:16429926..16439498-chr21:16561851..16585948,113	MCF-7	breast:
6	chr21:16421751..16443998-chr21:16557859..16589610,273	MCF-7	breast:
7	chr21:16576908..16578947-chr21:16816097..16818886,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180530	Chromatin interaction
ENSG00000236471	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1997595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1997596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56038390	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16575400-16579600	Enhancers	HepG2	liver
2	chr21:16576200-16585600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr21:16576400-16580000	Enhancers	Adipose Nuclei	Adipose
4	chr21:16576800-16580400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr21:16577000-16581000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr21:16577400-16580800	Weak transcription	Pancreas	Pancrea
7	chr21:16577400-16581200	Weak transcription	A549	lung
8	chr21:16577600-16578800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr21:16577600-16579600	Weak transcription	Hela-S3	cervix
10	chr21:16577600-16584000	Weak transcription	Right Ventricle	heart
11	chr21:16577800-16578800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr21:16577800-16581200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr21:16577800-16581800	Weak transcription	Fetal Kidney	kidney
14	chr21:16577800-16582200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr21:16577800-16582600	Weak transcription	Right Atrium	heart
16	chr21:16578000-16579600	Enhancers	Liver	Liver
17	chr21:16578200-16579800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr21:16578200-16582600	Weak transcription	Left Ventricle	heart
19	chr21:16578400-16579200	Enhancers	GM12878-XiMat	blood
20	chr21:16578400-16583800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr21:16578600-16578800	Enhancers	Primary B cells from cord blood	blood
22	chr21:16578600-16579000	Enhancers	Primary hematopoietic stem cells	blood
23	chr21:16578600-16579600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr21:16578800-16579400	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr21:16578800-16579400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr21:16578800-16579600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr21:16578800-16579600	Enhancers	Primary B cells from peripheral blood	blood

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