Variant report

Variant	rs2823147
Chromosome Location	chr21:16584560-16584561
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16583537..16586474-chr21:16857105..16859617,2	MCF-7	breast:
2	chr21:16581111..16587442-chr21:16661859..16666667,10	MCF-7	breast:
3	chr21:16584349..16587030-chr21:16664217..16666665,2	MCF-7	breast:
4	chr21:16580777..16584780-chr21:16852967..16856651,5	MCF-7	breast:
5	chr21:16584216..16586791-chr21:16587079..16588631,2	MCF-7	breast:
6	chr21:16429926..16439498-chr21:16561851..16585948,113	MCF-7	breast:
7	chr21:16421751..16443998-chr21:16557859..16589610,273	MCF-7	breast:
8	chr21:16507551..16509625-chr21:16582039..16584912,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2823150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823157	0.81[AFR][1000 genomes]
rs7276932	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16576200-16585600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr21:16579600-16584800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr21:16581000-16585400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr21:16582400-16585400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr21:16583400-16585400	Enhancers	Primary B cells from cord blood	blood
6	chr21:16583600-16585400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr21:16583800-16584600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr21:16583800-16584800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr21:16583800-16585600	Enhancers	Primary B cells from peripheral blood	blood
10	chr21:16583800-16586600	Enhancers	HepG2	liver
11	chr21:16584000-16584800	Enhancers	Fetal Intestine Large	intestine
12	chr21:16584200-16585000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr21:16584200-16585000	Weak transcription	Psoas Muscle	Psoas
14	chr21:16584400-16584800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr21:16584400-16585200	Enhancers	Primary hematopoietic stem cells	blood
16	chr21:16584400-16585400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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