Variant report

Variant	rs2823155
Chromosome Location	chr21:16587952-16587953
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:16249191..16252092-chr21:16587437..16590052,2	MCF-7	breast:
2	chr21:16584216..16586791-chr21:16587079..16588631,2	MCF-7	breast:
3	chr21:16586904..16589804-chr21:16590773..16592275,2	K562	blood:
4	chr21:16421751..16443998-chr21:16557859..16589610,273	MCF-7	breast:
5	chr21:16586940..16589372-chr21:16591214..16594501,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180530	Chromatin interaction
ENSG00000236471	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11909130	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12483396	0.85[EUR][1000 genomes]
rs12483484	0.87[EUR][1000 genomes]
rs13046557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13046821	0.88[EUR][1000 genomes]
rs13051325	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13052858	0.87[EUR][1000 genomes]
rs2064040	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2823148	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823154	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2823160	0.81[ASN][1000 genomes]
rs2823163	0.81[ASN][1000 genomes]
rs2823165	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2823166	0.81[ASN][1000 genomes]
rs2823167	0.81[ASN][1000 genomes]
rs2823168	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2823169	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2823172	1.00[CEU][hapmap];0.96[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2823173	1.00[CEU][hapmap];0.96[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2823174	1.00[CEU][hapmap];0.96[JPT][hapmap];0.88[EUR][1000 genomes]
rs2823175	1.00[CEU][hapmap];0.96[JPT][hapmap];0.88[EUR][1000 genomes]
rs2823176	0.88[EUR][1000 genomes]
rs2823178	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2823179	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2823180	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[JPT][hapmap];0.87[EUR][1000 genomes]
rs2823181	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs6517301	0.81[EUR][1000 genomes]
rs6517302	0.82[EUR][1000 genomes]
rs6517303	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs7281303	0.82[CEU][hapmap];0.96[JPT][hapmap];0.81[ASN][1000 genomes]
rs8131982	0.87[EUR][1000 genomes]
rs9808777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3454967	chr21:16586481-16591979	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1839906	chr21:16587118-16589135	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv587051	chr21:16587477-16589135	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv32772	chr21:16587490-16592163	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3454965	chr21:16587606-16591454	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16585400-16592000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr21:16585600-16591400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:16586000-16591400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr21:16586400-16592400	Weak transcription	Liver	Liver
5	chr21:16587800-16588600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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