Variant report

Variant	rs2823158
Chromosome Location	chr21:16591544-16591545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2823161	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2823165	0.81[CEU][hapmap]
rs2823168	0.81[CEU][hapmap]
rs2823169	0.81[CEU][hapmap]
rs2823170	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2823177	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57845248	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7281303	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3454967	chr21:16586481-16591979	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv32772	chr21:16587490-16592163	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3454968	chr21:16588025-16591737	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3454962	chr21:16588244-16591556	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv819831	chr21:16588272-16591913	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3454966	chr21:16588309-16591546	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1837138	chr21:16588414-16593184	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv587059	chr21:16588414-16600408	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16585400-16592000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr21:16586400-16592400	Weak transcription	Liver	Liver
3	chr21:16590200-16592200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr21:16591200-16592200	Weak transcription	HepG2	liver
5	chr21:16591400-16592200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr21:16591400-16592200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr21:16591400-16592400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr21:16591400-16592400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr21:16591400-16595200	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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