Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11088579	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12482948	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1475883	0.89[EUR][1000 genomes]
rs1475884	0.89[EUR][1000 genomes]
rs1475885	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs1492952	0.87[JPT][hapmap]
rs1689059	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs2823639	0.88[JPT][hapmap]
rs2823641	0.88[JPT][hapmap]
rs2823643	0.88[JPT][hapmap]
rs2823646	0.88[JPT][hapmap]
rs2823657	0.88[JPT][hapmap]
rs2823658	0.88[JPT][hapmap]
rs2823660	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2823661	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2823662	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62219537	0.85[EUR][1000 genomes]
rs7276974	0.96[CEU][hapmap]
rs73364897	0.85[EUR][1000 genomes]
rs915799	0.88[JPT][hapmap]
rs9637000	0.82[JPT][hapmap]
rs9978459	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432145	chr21:17559229-17628529	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17584400-17619400	Weak transcription	Hela-S3	cervix
2	chr21:17585000-17612200	Weak transcription	Adipose Nuclei	Adipose
3	chr21:17598000-17622200	Weak transcription	Ovary	ovary
4	chr21:17598000-17622400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr21:17602000-17614000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr21:17606000-17612000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr21:17606200-17622200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr21:17608000-17612200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr21:17610600-17612200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr21:17611400-17613800	Weak transcription	Fetal Brain Male	brain

Quick Search: