The 2.0 version of rSNPBase

Variant report

Variant rs2823885
Chromosome Location chr21:17935650-17935651
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:17910200-17942000 Weak transcription Brain Anterior Caudate brain
2 chr21:17910200-17943200 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr21:17912200-17936000 Weak transcription Adipose Nuclei Adipose
4 chr21:17912200-17942000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr21:17918600-17935800 Weak transcription Fetal Stomach stomach
6 chr21:17919000-17935800 Weak transcription HSMMtube muscle
7 chr21:17922800-17935800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr21:17923800-17942000 Weak transcription Right Ventricle heart
9 chr21:17924200-17941000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr21:17925400-17960400 Weak transcription Esophagus oesophagus
11 chr21:17927200-17935800 Weak transcription Right Atrium heart
12 chr21:17927200-17942000 Weak transcription Brain Hippocampus Middle brain
13 chr21:17927200-17950200 Weak transcription Fetal Lung lung
14 chr21:17927200-17950800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr21:17927400-17935800 Weak transcription HUVEC blood vessel
16 chr21:17927400-17936000 Weak transcription Ovary ovary
17 chr21:17927400-17942000 Weak transcription Brain Inferior Temporal Lobe brain
18 chr21:17929000-17935800 Weak transcription Fetal Muscle Leg muscle
19 chr21:17929000-17936200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr21:17929000-17938200 Weak transcription Fetal Muscle Trunk muscle
21 chr21:17930200-17942200 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr21:17932400-17936000 Enhancers A549 lung
23 chr21:17932800-17939800 Weak transcription Fetal Brain Female brain
24 chr21:17934200-17937200 Enhancers Breast Myoepithelial Primary Cells Breast
25 chr21:17934400-17936200 Weak transcription HUES6 Cell Line embryonic stem cell
26 chr21:17934400-17936400 Weak transcription iPS-18 Cell Line embryonic stem cell
27 chr21:17934400-17937200 Enhancers Hela-S3 cervix
28 chr21:17934600-17935800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr21:17934600-17936200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr21:17934600-17936200 Weak transcription Left Ventricle heart
31 chr21:17934600-17958600 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr21:17935000-17937000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
33 chr21:17935000-17937200 Enhancers HSMM muscle
34 chr21:17935200-17936400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr21:17935400-17936000 Weak transcription Placenta Amnion Placenta Amnion
36 chr21:17935400-17936200 Enhancers HUES48 Cell Line embryonic stem cell
37 chr21:17935400-17936400 Enhancers Muscle Satellite Cultured Cells --
38 chr21:17935400-17936800 Enhancers HUES64 Cell Line embryonic stem cell
39 chr21:17935400-17937200 Enhancers HMEC breast
40 chr21:17935400-17937400 Enhancers Liver Liver
41 chr21:17935400-17942000 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr21:17935600-17935800 Enhancers H9 Cell Line embryonic stem cell
43 chr21:17935600-17936200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
44 chr21:17935600-17936400 Enhancers NH-A brain
45 chr21:17935600-17936600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
46 chr21:17935600-17936600 Weak transcription iPS-20b Cell Line embryonic stem cell

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Last update: Aug 31, 2015