Variant report

Variant	rs2830384
Chromosome Location	chr21:28059068-28059069
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2830381	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2830398	0.86[ASN][1000 genomes]
rs2830430	0.82[ASN][1000 genomes]
rs2830434	0.87[EUR][1000 genomes]
rs3017521	0.81[ASN][1000 genomes]
rs3017522	0.87[EUR][1000 genomes]
rs954841	0.87[AFR][1000 genomes]
rs954842	0.86[AFR][1000 genomes]
rs954843	0.88[AFR][1000 genomes]
rs954844	0.88[AFR][1000 genomes]
rs9974534	0.87[ASN][1000 genomes]
rs9984497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9984500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv544413	chr21:27942060-28065995	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28059000-28059200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:28059000-28059400	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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