Variant report

Variant	rs2830422
Chromosome Location	chr21:28082357-28082358
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2830398	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2830410	0.86[EUR][1000 genomes]
rs2830416	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2830417	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2830421	0.87[EUR][1000 genomes]
rs2830430	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2830434	0.85[ASN][1000 genomes]
rs2830439	0.85[EUR][1000 genomes]
rs3017521	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3017522	0.85[ASN][1000 genomes]
rs9974534	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459223	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv587337	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28080000-28083600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr21:28080000-28083600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:28081600-28082600	Weak transcription	Dnd41	blood
4	chr21:28081800-28083000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr21:28082000-28082800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr21:28082000-28082800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr21:28082000-28083000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr21:28082200-28082800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr21:28082200-28083000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr21:28082200-28083200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr21:28082200-28083400	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links