Variant report

Variant rs28309
Chromosome Location chr5:115815173-115815174
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115783600-115829600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr5:115791600-115838000 Weak transcription Right Ventricle heart
3 chr5:115796000-115833400 Strong transcription HUES64 Cell Line embryonic stem cell
4 chr5:115797000-115834800 Strong transcription H1 Cell Line embryonic stem cell
5 chr5:115797000-115838400 Strong transcription Placenta Placenta
6 chr5:115797400-115833800 Strong transcription iPS-18 Cell Line embryonic stem cell
7 chr5:115797600-115834600 Strong transcription H9 Cell Line embryonic stem cell
8 chr5:115797800-115834800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr5:115798000-115833200 Strong transcription HUES48 Cell Line embryonic stem cell
10 chr5:115798000-115834600 Strong transcription iPS-20b Cell Line embryonic stem cell
11 chr5:115799000-115830400 Strong transcription HUES6 Cell Line embryonic stem cell
12 chr5:115799400-115832000 Strong transcription Fetal Muscle Trunk muscle
13 chr5:115801400-115824000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr5:115801400-115825000 Weak transcription Psoas Muscle Psoas
15 chr5:115803000-115815400 Weak transcription Thymus Thymus
16 chr5:115803400-115816000 Strong transcription Cortex derived primary cultured neurospheres brain
17 chr5:115803400-115833200 Strong transcription iPS-15b Cell Line embryonic stem cell
18 chr5:115804600-115822600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr5:115808800-115818200 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr5:115810800-115821200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr5:115811000-115815600 Strong transcription Left Ventricle heart
22 chr5:115811800-115818200 Strong transcription Fetal Brain Female brain
23 chr5:115812000-115816000 Strong transcription Brain Anterior Caudate brain
24 chr5:115812200-115817200 Strong transcription Brain Substantia Nigra brain
25 chr5:115812200-115818400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr5:115812600-115815800 Strong transcription Brain Angular Gyrus brain
27 chr5:115812600-115815800 Strong transcription Brain Hippocampus Middle brain
28 chr5:115812600-115818600 Strong transcription Colonic Mucosa Colon
29 chr5:115813200-115815800 Strong transcription Brain Inferior Temporal Lobe brain
30 chr5:115813200-115816000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr5:115813200-115818400 Strong transcription Brain Germinal Matrix brain
32 chr5:115813200-115819200 Strong transcription Sigmoid Colon Sigmoid Colon
33 chr5:115813200-115824400 Strong transcription ES-I3 Cell Line embryonic stem cell
34 chr5:115813200-115826200 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr5:115813400-115815800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
36 chr5:115813400-115816400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr5:115813400-115816400 Strong transcription Duodenum Smooth Muscle Duodenum
38 chr5:115813400-115818400 Strong transcription Fetal Kidney kidney
39 chr5:115813400-115820800 Strong transcription Rectal Mucosa Donor 31 rectum
40 chr5:115813400-115822400 Strong transcription Fetal Intestine Large intestine
41 chr5:115813600-115815800 Weak transcription Spleen Spleen
42 chr5:115813600-115816000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr5:115813600-115816400 Enhancers Primary hematopoietic stem cells blood
44 chr5:115813600-115818000 Weak transcription Muscle Satellite Cultured Cells --
45 chr5:115813600-115821400 Weak transcription Pancreatic Islets Pancreatic Islet
46 chr5:115813600-115826800 Strong transcription Fetal Muscle Leg muscle
47 chr5:115813600-115831800 Strong transcription Fetal Stomach stomach
48 chr5:115813600-115832000 Strong transcription Fetal Adrenal Gland Adrenal Gland
49 chr5:115813800-115815400 Weak transcription HSMMtube muscle
50 chr5:115813800-115815600 Weak transcription Brain Cingulate Gyrus brain

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