Variant report

Variant	rs2831047
Chromosome Location	chr21:29025804-29025805
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-USP16-7	chr21:29025675-29025810	XLOC_013896
2	lnc-USP16-7	chr21:29025674-29025810	NONHSAT081577

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10211858	0.82[ASN][1000 genomes]
rs10211869	0.85[ASN][1000 genomes]
rs10211870	0.84[ASN][1000 genomes]
rs1041802	0.87[ASN][1000 genomes]
rs11088039	0.86[ASN][1000 genomes]
rs1155159	0.87[ASN][1000 genomes]
rs11909433	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12152077	0.89[ASN][1000 genomes]
rs1367718	0.87[ASN][1000 genomes]
rs1367719	0.87[ASN][1000 genomes]
rs1475586	0.87[ASN][1000 genomes]
rs1557386	0.87[ASN][1000 genomes]
rs1560471	0.87[ASN][1000 genomes]
rs1579524	0.81[CHB][hapmap]
rs1835648	0.87[ASN][1000 genomes]
rs1835649	0.87[ASN][1000 genomes]
rs1888433	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2017308	0.87[ASN][1000 genomes]
rs2831038	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2831040	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2831058	0.87[ASN][1000 genomes]
rs2831059	0.87[ASN][1000 genomes]
rs2831060	0.87[ASN][1000 genomes]
rs2831061	0.87[ASN][1000 genomes]
rs2831062	0.87[ASN][1000 genomes]
rs2831063	0.87[ASN][1000 genomes]
rs2831064	0.87[ASN][1000 genomes]
rs2831066	0.87[ASN][1000 genomes]
rs2831067	0.87[ASN][1000 genomes]
rs2831068	0.87[ASN][1000 genomes]
rs2831070	0.87[ASN][1000 genomes]
rs2831071	0.85[ASN][1000 genomes]
rs2831072	0.84[ASN][1000 genomes]
rs2831073	0.84[ASN][1000 genomes]
rs2831074	0.84[ASN][1000 genomes]
rs2831075	0.84[ASN][1000 genomes]
rs2831076	0.86[ASN][1000 genomes]
rs2831077	0.86[ASN][1000 genomes]
rs2831078	0.86[ASN][1000 genomes]
rs2831079	0.86[ASN][1000 genomes]
rs2831080	0.86[ASN][1000 genomes]
rs2831081	0.86[ASN][1000 genomes]
rs2831082	0.85[ASN][1000 genomes]
rs2831083	0.86[ASN][1000 genomes]
rs2831084	0.85[ASN][1000 genomes]
rs2831085	0.86[ASN][1000 genomes]
rs2831087	0.86[ASN][1000 genomes]
rs2831088	0.86[ASN][1000 genomes]
rs2831089	0.86[ASN][1000 genomes]
rs2831090	0.80[ASN][1000 genomes]
rs2831091	0.85[ASN][1000 genomes]
rs2831092	0.83[ASN][1000 genomes]
rs2831094	0.83[ASN][1000 genomes]
rs2831096	0.83[ASN][1000 genomes]
rs2831097	0.83[ASN][1000 genomes]
rs2831098	0.83[ASN][1000 genomes]
rs2831134	0.84[CHB][hapmap]
rs28394464	0.85[ASN][1000 genomes]
rs28470885	0.87[ASN][1000 genomes]
rs28576337	0.86[ASN][1000 genomes]
rs28786796	0.88[ASN][1000 genomes]
rs2898115	0.87[ASN][1000 genomes]
rs3902397	0.83[ASN][1000 genomes]
rs3906629	0.86[ASN][1000 genomes]
rs3910128	0.86[ASN][1000 genomes]
rs3910129	0.86[ASN][1000 genomes]
rs3910130	0.86[ASN][1000 genomes]
rs4113960	0.83[ASN][1000 genomes]
rs4113961	0.83[ASN][1000 genomes]
rs4438569	0.89[ASN][1000 genomes]
rs5005234	0.84[ASN][1000 genomes]
rs5005235	0.84[ASN][1000 genomes]
rs5005236	0.84[ASN][1000 genomes]
rs5005237	0.84[ASN][1000 genomes]
rs6516772	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs715241	0.87[ASN][1000 genomes]
rs715242	0.87[ASN][1000 genomes]
rs7281308	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73183739	0.84[ASN][1000 genomes]
rs7510446	0.84[ASN][1000 genomes]
rs914133	0.87[ASN][1000 genomes]
rs914134	0.87[ASN][1000 genomes]
rs9653692	0.86[ASN][1000 genomes]
rs9653693	0.86[ASN][1000 genomes]
rs991700	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9974135	0.89[ASN][1000 genomes]
rs9974297	0.87[ASN][1000 genomes]
rs9974761	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9974860	0.89[ASN][1000 genomes]
rs9975519	0.86[ASN][1000 genomes]
rs9975804	0.86[ASN][1000 genomes]
rs9976066	0.86[ASN][1000 genomes]
rs9976248	0.86[ASN][1000 genomes]
rs9977067	0.83[ASN][1000 genomes]
rs9977138	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9977323	0.86[ASN][1000 genomes]
rs9977452	0.86[ASN][1000 genomes]
rs9977509	0.83[ASN][1000 genomes]
rs9977527	0.85[ASN][1000 genomes]
rs9979154	0.87[ASN][1000 genomes]
rs9979177	0.85[ASN][1000 genomes]
rs9979321	0.87[ASN][1000 genomes]
rs9979569	0.86[ASN][1000 genomes]
rs9979996	0.87[ASN][1000 genomes]
rs9980014	0.85[ASN][1000 genomes]
rs9981215	0.89[ASN][1000 genomes]
rs9981404	0.88[ASN][1000 genomes]
rs9981772	0.87[ASN][1000 genomes]
rs9982537	0.85[ASN][1000 genomes]
rs9982546	0.86[ASN][1000 genomes]
rs9982677	0.87[ASN][1000 genomes]
rs9983211	0.85[ASN][1000 genomes]
rs9983340	0.87[ASN][1000 genomes]
rs9983405	0.88[ASN][1000 genomes]
rs9983418	0.87[ASN][1000 genomes]
rs9983492	0.87[ASN][1000 genomes]
rs9983636	0.86[ASN][1000 genomes]
rs9983784	0.87[ASN][1000 genomes]
rs9983804	0.87[ASN][1000 genomes]
rs9983943	0.86[ASN][1000 genomes]
rs9983947	0.86[ASN][1000 genomes]
rs9983950	0.86[ASN][1000 genomes]
rs9985086	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv459229	chr21:28543456-29482488	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv587342	chr21:28543456-29482488	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1059423	chr21:28957144-29306656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv913670	chr21:29022265-29525767	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:29025400-29026200	Enhancers	HMEC	breast
2	chr21:29025400-29026400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr21:29025600-29026400	Enhancers	NHEK	skin
4	chr21:29025800-29026200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr21:29025800-29026400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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