Variant report

Variant	rs2831129
Chromosome Location	chr21:29074311-29074312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:28221585..28222726-chr21:29073735..29074729,3	MCF-7	breast:
2	chr21:28221528..28223154-chr21:29072525..29074611,26	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1074306	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1431361	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1431362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1431363	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16981091	0.89[AMR][1000 genomes]
rs2831128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2831130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2831131	1.00[EUR][1000 genomes]
rs2831132	1.00[EUR][1000 genomes]
rs2831133	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2831136	0.89[AMR][1000 genomes]
rs28429277	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28672074	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28709935	0.89[AMR][1000 genomes]
rs28796720	0.89[AMR][1000 genomes]
rs5002119	0.89[AMR][1000 genomes]
rs56774116	0.89[AMR][1000 genomes]
rs57274057	0.89[AFR][1000 genomes]
rs61132533	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6516778	0.89[AMR][1000 genomes]
rs7275530	0.89[AMR][1000 genomes]
rs7275805	0.82[AFR][1000 genomes]
rs7283490	0.89[AMR][1000 genomes]
rs73388102	0.89[AMR][1000 genomes]
rs73390062	0.89[AMR][1000 genomes]
rs9305332	0.89[AMR][1000 genomes]
rs9974260	0.89[AMR][1000 genomes]
rs9976745	0.88[AFR][1000 genomes]
rs9977384	0.88[AFR][1000 genomes]
rs9978827	0.89[AMR][1000 genomes]
rs9982568	0.85[AFR][1000 genomes]
rs9984149	0.89[AMR][1000 genomes]
rs9984742	0.89[AMR][1000 genomes]
rs9984856	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459229	chr21:28543456-29482488	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv587342	chr21:28543456-29482488	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1059423	chr21:28957144-29306656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv913670	chr21:29022265-29525767	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1059134	chr21:29061408-29188185	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:29067400-29076000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr21:29073000-29074400	Enhancers	Fetal Lung	lung
3	chr21:29073200-29075800	Weak transcription	NHDF-Ad	bronchial
4	chr21:29073800-29075600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr21:29074000-29074800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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