Variant report

Variant	rs2831139
Chromosome Location	chr21:29100254-29100255
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1074306	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1431361	0.89[AMR][1000 genomes]
rs1431363	0.89[AMR][1000 genomes]
rs1431365	0.95[AFR][1000 genomes]
rs16981091	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2831131	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2831132	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2831133	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2831136	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28672074	0.89[AMR][1000 genomes]
rs28709935	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28796720	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs5002119	0.89[AMR][1000 genomes]
rs56774116	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6516778	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7275530	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7277941	0.98[AFR][1000 genomes]
rs7279944	0.84[AFR][1000 genomes]
rs7280183	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7283490	0.89[AMR][1000 genomes]
rs73388102	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73390062	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8134876	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9305332	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9974260	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9978827	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9984149	0.89[AMR][1000 genomes]
rs9984742	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459229	chr21:28543456-29482488	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv587342	chr21:28543456-29482488	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1059423	chr21:28957144-29306656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv913670	chr21:29022265-29525767	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1059134	chr21:29061408-29188185	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:29095000-29106400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links