Variant report

Variant	rs283184
Chromosome Location	chr6:101745377-101745378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1485836	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1749234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2629986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs283212	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs366894	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs518540	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs522795	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs613750	0.92[AMR][1000 genomes]
rs644521	0.92[AMR][1000 genomes]
rs649371	0.92[AMR][1000 genomes]
rs7756533	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101743400-101745400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:101743800-101746000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:101744600-101750600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links