Variant report

Variant	rs283274
Chromosome Location	chr20:53534073-53534074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:53534051..53536678-chr21:46494262..46495892,2	MCF-7	breast:
2	chr20:53528909..53530872-chr20:53533679..53535897,2	MCF-7	breast:
3	chr2:221619238..221620082-chr20:53533829..53534690,2	MCF-7	breast:
4	chr20:53533974..53538629-chr20:53538672..53542933,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197381	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11696214	0.82[EUR][1000 genomes]
rs1398111	0.82[EUR][1000 genomes]
rs1398118	0.82[EUR][1000 genomes]
rs17000338	0.82[EUR][1000 genomes]
rs283275	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs283276	0.99[ASN][1000 genomes]
rs2870371	0.80[EUR][1000 genomes]
rs2870372	0.82[EUR][1000 genomes]
rs34354535	0.82[EUR][1000 genomes]
rs35146414	0.82[EUR][1000 genomes]
rs36033340	0.82[EUR][1000 genomes]
rs367809	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6064132	0.82[EUR][1000 genomes]
rs6069026	0.80[EUR][1000 genomes]
rs6069030	0.80[EUR][1000 genomes]
rs6069031	0.80[EUR][1000 genomes]
rs66704169	0.84[EUR][1000 genomes]
rs7263291	0.86[CEU][hapmap]
rs733093	0.86[CEU][hapmap]
rs958026	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs992981	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv1064144	chr20:53175264-53750137	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv544302	chr20:53175264-53750137	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv1060552	chr20:53234716-53655115	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv521883	chr20:53497139-53563837	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv524442	chr20:53497139-53563837	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	esv3376519	chr20:53513594-53542087	Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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