Variant report

Variant	rs28357211
Chromosome Location	chr7:27386821-27386822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27386607..27388873-chr7:27463888..27465828,2	MCF-7	breast:
2	chr7:27385251..27387696-chr7:27388686..27392238,3	K562	blood:
3	chr7:27274118..27275795-chr7:27385086..27386889,2	MCF-7	breast:
4	chr7:27385251..27387696-chr7:27388686..27391421,2	K562	blood:
5	chr7:27384042..27388224-chr7:27459528..27463800,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EVX1-18	chr7:27386706-27387350	NONHSAT119730

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10231773	0.84[ASN][1000 genomes]
rs28357213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27379800-27388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:27384400-27387200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr7:27385400-27387200	Enhancers	Fetal Intestine Large	intestine
4	chr7:27385600-27387200	Enhancers	HMEC	breast
5	chr7:27385600-27387400	Enhancers	Fetal Lung	lung
6	chr7:27386200-27387000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:27386200-27387000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:27386200-27387000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:27386200-27387000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:27386200-27387000	Flanking Active TSS	Hela-S3	cervix
11	chr7:27386200-27387200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:27386200-27387200	Enhancers	Placenta	Placenta
13	chr7:27386200-27387200	Enhancers	Fetal Stomach	stomach
14	chr7:27386200-27387200	Enhancers	Stomach Mucosa	stomach
15	chr7:27386400-27387000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:27386400-27387000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:27386400-27387000	Enhancers	NHEK	skin
18	chr7:27386400-27387200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:27386400-27387200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:27386400-27387200	Enhancers	Adipose Nuclei	Adipose
21	chr7:27386400-27387400	Enhancers	Colon Smooth Muscle	Colon
22	chr7:27386600-27387000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr7:27386600-27387000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:27386600-27387000	Enhancers	Brain Hippocampus Middle	brain
25	chr7:27386600-27387000	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr7:27386600-27387000	Enhancers	Ovary	ovary
27	chr7:27386600-27387000	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr7:27386600-27387200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:27386600-27387200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:27386600-27387200	Active TSS	Brain Cingulate Gyrus	brain
31	chr7:27386600-27387200	Enhancers	HepG2	liver
32	chr7:27386600-27387800	Enhancers	Pancreas	Pancrea
33	chr7:27386800-27387000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr7:27386800-27387000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
35	chr7:27386800-27387000	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr7:27386800-27387000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
37	chr7:27386800-27387200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr7:27386800-27387200	Enhancers	Rectal Smooth Muscle	rectum
39	chr7:27386800-27387200	Enhancers	Stomach Smooth Muscle	stomach
40	chr7:27386800-27387600	Flanking Active TSS	A549	lung

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