Variant report

Variant	rs28357320
Chromosome Location	chr8:119102040-119102041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:119100518..119102625-chr8:119123075..119125486,2	MCF-7	breast:
2	chr8:119101278..119103076-chr8:119123534..119125299,2	MCF-7	breast:
3	chr8:119099935..119103110-chr8:119103633..119107379,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182197	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv831441	chr8:119055370-119262970	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv2752195	chr8:119058819-119139819	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv821660	chr8:119082062-119312183	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119092400-119104800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:119092600-119110200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:119094200-119117000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:119094400-119110200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:119097600-119113400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:119098400-119102600	Enhancers	Colon Smooth Muscle	Colon
7	chr8:119098400-119102800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr8:119098800-119117800	Weak transcription	Brain Germinal Matrix	brain
9	chr8:119099000-119102200	Enhancers	Fetal Heart	heart
10	chr8:119099200-119102600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:119099400-119102600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:119099400-119109800	Weak transcription	Brain Anterior Caudate	brain
13	chr8:119099600-119102200	Weak transcription	Fetal Intestine Large	intestine
14	chr8:119100000-119102600	Enhancers	Fetal Lung	lung
15	chr8:119100200-119102200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:119100200-119102200	Enhancers	HSMMtube	muscle
17	chr8:119100200-119102400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:119100200-119102600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr8:119100200-119108400	Genic enhancers	Osteobl	bone
20	chr8:119100400-119102200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:119100400-119102200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:119100400-119102400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:119100400-119102400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr8:119100400-119102400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:119100400-119102400	Enhancers	Fetal Brain Male	brain
26	chr8:119100400-119102400	Enhancers	Fetal Muscle Leg	muscle
27	chr8:119100400-119102400	Active TSS	Stomach Smooth Muscle	stomach
28	chr8:119100400-119102600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:119100400-119102600	Enhancers	Fetal Stomach	stomach
30	chr8:119100400-119110000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr8:119100600-119102200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr8:119100600-119102200	Weak transcription	Fetal Intestine Small	intestine
33	chr8:119100600-119102400	Flanking Active TSS	HUVEC	blood vessel
34	chr8:119100600-119106200	Weak transcription	Aorta	Aorta
35	chr8:119100600-119109800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr8:119100800-119102200	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr8:119100800-119102200	Enhancers	HSMM	muscle
38	chr8:119100800-119102400	Flanking Active TSS	A549	lung
39	chr8:119100800-119102600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr8:119100800-119102600	Enhancers	NH-A	brain
41	chr8:119101000-119102600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr8:119101200-119102200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr8:119101200-119102400	Flanking Active TSS	NHEK	skin
44	chr8:119101200-119102600	Enhancers	Hela-S3	cervix
45	chr8:119101200-119110000	Weak transcription	Fetal Brain Female	brain
46	chr8:119101400-119102600	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr8:119101400-119102800	Flanking Active TSS	GM12878-XiMat	blood
48	chr8:119101600-119102200	Active TSS	Primary B cells from cord blood	blood
49	chr8:119101600-119102200	Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr8:119101600-119102200	Active TSS	Primary T helper naive cells fromperipheralblood	blood

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