Variant report

Variant	rs28360369
Chromosome Location	chr1:171232944-171232945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12139312	0.83[EUR][1000 genomes]
rs12141357	1.00[EUR][1000 genomes]
rs12142492	1.00[EUR][1000 genomes]
rs12144402	1.00[EUR][1000 genomes]
rs12145368	1.00[EUR][1000 genomes]
rs28384856	1.00[EUR][1000 genomes]
rs28384863	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	esv10193	chr1:171128845-171414611	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831882	chr1:171166224-171326083	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171228400-171233000	Strong transcription	Fetal Intestine Large	intestine
2	chr1:171228600-171233000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:171228600-171235200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:171228800-171233000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:171228800-171244400	Weak transcription	Fetal Kidney	kidney
6	chr1:171229200-171234600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:171229400-171235000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:171230600-171235000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:171230600-171236200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:171232200-171234200	Strong transcription	Fetal Intestine Small	intestine
11	chr1:171232400-171233200	Enhancers	Ovary	ovary
12	chr1:171232400-171233800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:171232400-171233800	Enhancers	Fetal Lung	lung
14	chr1:171232400-171234200	Enhancers	Fetal Muscle Leg	muscle
15	chr1:171232600-171233000	Enhancers	Placenta	Placenta
16	chr1:171232600-171233800	Enhancers	Fetal Stomach	stomach
17	chr1:171232800-171233800	Enhancers	NHDF-Ad	bronchial
18	chr1:171232800-171234000	Enhancers	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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