Variant report

Variant	rs28362937
Chromosome Location	chr11:57364162-57364163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr11:57364014-57364285	HepG2	liver:	n/a	n/a
2	FOXA1	chr11:57364017-57364394	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57363269..57366608-chr11:57366625..57370345,5	K562	blood:
2	chr11:57280138..57282809-chr11:57363760..57366213,2	MCF-7	breast:

Variant related genes	Relation type
SERPING1	TF binding region
ENSG00000149131	Chromatin interaction
ENSG00000149150	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11570198	1.00[AMR][1000 genomes]
rs17152015	1.00[AMR][1000 genomes]
rs17152045	1.00[AMR][1000 genomes]
rs28362936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28362942	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv832163	chr11:57299354-57481050	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57358600-57365000	Weak transcription	Pancreas	Pancrea
2	chr11:57360600-57364600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:57362400-57364600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:57362400-57364600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:57362600-57364600	Enhancers	Fetal Muscle Leg	muscle
6	chr11:57362800-57364400	Enhancers	Liver	Liver
7	chr11:57363000-57364600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:57363000-57365400	Weak transcription	Fetal Thymus	thymus
9	chr11:57363200-57365000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:57363400-57364400	Weak transcription	Fetal Kidney	kidney
11	chr11:57363400-57364600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:57363400-57364600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:57363600-57364600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:57363800-57364600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:57364000-57364200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:57364000-57364200	Enhancers	Lung	lung
17	chr11:57364000-57364200	Flanking Active TSS	HepG2	liver
18	chr11:57364000-57364400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:57364000-57364400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:57364000-57364600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr11:57364000-57364600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr11:57364000-57364600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:57364000-57364600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:57364000-57364600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:57364000-57364600	Enhancers	Osteobl	bone
26	chr11:57364000-57364800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:57364000-57364800	Enhancers	Fetal Muscle Trunk	muscle
28	chr11:57364000-57365200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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