Variant report

Variant	rs2836410
Chromosome Location	chr21:39819563-39819564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11701207	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2836403	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834098	chr21:39691898-39845254	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1059340	chr21:39817504-39881353	Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39811200-39847400	Weak transcription	Right Ventricle	heart
2	chr21:39812400-39820600	Weak transcription	Right Atrium	heart
3	chr21:39812400-39820600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr21:39812800-39844600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr21:39813000-39820600	Weak transcription	Esophagus	oesophagus
6	chr21:39813000-39820600	Weak transcription	Fetal Heart	heart
7	chr21:39813200-39820800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr21:39813200-39833400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr21:39815600-39820600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr21:39816000-39821000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr21:39817000-39820400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr21:39817000-39820400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr21:39817400-39820600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr21:39818200-39820600	Enhancers	HUVEC	blood vessel
15	chr21:39818400-39821200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr21:39818600-39820000	Enhancers	Left Ventricle	heart
17	chr21:39819000-39820800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr21:39819000-39821000	Enhancers	Fetal Muscle Leg	muscle
19	chr21:39819200-39819600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr21:39819200-39819600	Enhancers	Adipose Nuclei	Adipose
21	chr21:39819200-39820200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr21:39819200-39820600	Weak transcription	Lung	lung
23	chr21:39819200-39820600	Weak transcription	Spleen	Spleen
24	chr21:39819200-39821200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr21:39819400-39820000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr21:39819400-39820800	Weak transcription	Aorta	Aorta
27	chr21:39819400-39821200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr21:39819400-39822400	Enhancers	Primary hematopoietic stem cells	blood

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