Variant report

Variant	rs2836453
Chromosome Location	chr21:39880652-39880653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12626596	0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17193997	1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17285245	0.92[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17285252	0.92[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2836451	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2836455	1.00[YRI][hapmap]
rs3787906	1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3787909	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059340	chr21:39817504-39881353	Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39879200-39882000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr21:39879200-39882400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr21:39879600-39880800	Weak transcription	Right Atrium	heart
4	chr21:39879800-39884200	Weak transcription	HUVEC	blood vessel
5	chr21:39880000-39881000	Weak transcription	Spleen	Spleen
6	chr21:39880000-39881200	Weak transcription	Fetal Lung	lung
7	chr21:39880000-39891200	Weak transcription	Aorta	Aorta
8	chr21:39880200-39883600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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