Variant report

Variant	rs2836515
Chromosome Location	chr21:39932379-39932380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39928305..39930106-chr21:39932003..39933679,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11088435	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11088436	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11701672	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12482035	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12482036	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12482155	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12482179	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12482226	0.96[ASN][1000 genomes]
rs12483176	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12483195	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16996463	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2212601	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2212602	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2226682	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836498	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836499	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836500	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2836501	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836502	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836503	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836504	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836506	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836507	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836508	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836509	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836510	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836511	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2836514	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836517	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836519	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28536009	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28562445	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3787917	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56080396	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62219616	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62219639	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8128002	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8128006	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8129056	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8129400	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8130048	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8130830	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8132394	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8132408	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8133498	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9977835	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9977841	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9978050	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9978197	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9978706	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9980821	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751930	chr21:39917180-39956061	Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv3516	chr21:39928540-39936213	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39911200-39935200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr21:39929000-39946800	Weak transcription	Aorta	Aorta
3	chr21:39932000-39932400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr21:39932000-39932400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr21:39932200-39932400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr21:39932200-39932400	Enhancers	Fetal Muscle Trunk	muscle
7	chr21:39932200-39932400	ZNF genes & repeats	Lung	lung
8	chr21:39932200-39932800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr21:39932200-39940600	Weak transcription	Gastric	stomach

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