Variant report

Variant	rs28367129
Chromosome Location	chr17:45855181-45855182
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000141294	Chromatin interaction
ENSG00000141232	Chromatin interaction
ENSG00000159111	Chromatin interaction
ENSG00000229980	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12325797	1.00[AMR][1000 genomes]
rs13380818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16943870	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498122	chr17:45763853-46064327	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45850800-45855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:45854800-45855600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr17:45855000-45855200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr17:45855000-45855200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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