Variant report

Variant	rs28368170
Chromosome Location	chr9:100338832-100338833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100315064..100317144-chr9:100338038..100339669,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10114427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10120837	0.82[EUR][1000 genomes]
rs10982895	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12345701	0.97[EUR][1000 genomes]
rs12346614	0.86[EUR][1000 genomes]
rs12349752	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12349848	0.97[EUR][1000 genomes]
rs12353111	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16922319	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs66475733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751529	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72751532	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72751535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9777684	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100327000-100349200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:100327200-100340000	Weak transcription	Fetal Stomach	stomach
3	chr9:100330400-100339400	Weak transcription	Brain Germinal Matrix	brain
4	chr9:100333400-100340800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:100333600-100339400	Weak transcription	Pancreas	Pancrea
6	chr9:100333600-100341400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:100333600-100361800	Weak transcription	Gastric	stomach
8	chr9:100334200-100340800	Weak transcription	Psoas Muscle	Psoas
9	chr9:100334200-100356000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:100334400-100356000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:100334400-100356400	Weak transcription	HSMMtube	muscle
12	chr9:100334600-100339400	Weak transcription	Lung	lung
13	chr9:100334600-100353600	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:100334800-100355600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr9:100335000-100341800	Weak transcription	Fetal Heart	heart
16	chr9:100335400-100341000	Weak transcription	Right Ventricle	heart
17	chr9:100335600-100356600	Weak transcription	Brain Angular Gyrus	brain
18	chr9:100336200-100340200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:100336200-100349200	Weak transcription	K562	blood
20	chr9:100336200-100356200	Weak transcription	Aorta	Aorta
21	chr9:100336200-100360000	Weak transcription	Brain Substantia Nigra	brain
22	chr9:100337800-100341400	Weak transcription	Fetal Brain Female	brain
23	chr9:100338000-100339200	Weak transcription	Adipose Nuclei	Adipose
24	chr9:100338200-100340800	Weak transcription	Brain Hippocampus Middle	brain
25	chr9:100338200-100340800	Weak transcription	Left Ventricle	heart
26	chr9:100338200-100340800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr9:100338200-100356200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr9:100338200-100356800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:100338400-100339400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr9:100338400-100341000	Weak transcription	Ovary	ovary
31	chr9:100338400-100341800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr9:100338400-100353400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr9:100338400-100356000	Weak transcription	Brain Anterior Caudate	brain
34	chr9:100338400-100361600	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr9:100338600-100340600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr9:100338600-100340800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr9:100338600-100353200	Weak transcription	Fetal Muscle Leg	muscle
38	chr9:100338600-100360800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr9:100338800-100339200	Weak transcription	Primary monocytes fromperipheralblood	blood

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