Variant report

Variant	rs28368520
Chromosome Location	chr15:79277780-79277781
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12101364	1.00[EUR][1000 genomes]
rs16970387	0.81[EUR][1000 genomes]
rs28391216	1.00[EUR][1000 genomes]
rs28407629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28427472	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28461937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28464364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28501391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28501618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28513164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28516885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28546944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28547879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28549817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28557276	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28565526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28567804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28587174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28603308	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28624404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28651192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28674868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28683537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28705105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28709904	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28716558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28718997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28722773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28738778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9920807	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79244000-79288000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:79261200-79280400	Weak transcription	Esophagus	oesophagus
3	chr15:79270000-79278400	Weak transcription	Fetal Intestine Small	intestine
4	chr15:79272200-79280000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:79272200-79280000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:79272200-79280200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:79272200-79280200	Weak transcription	Pancreas	Pancrea
8	chr15:79272200-79280400	Weak transcription	Brain Substantia Nigra	brain
9	chr15:79272200-79280600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:79272200-79284400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:79272400-79279600	Weak transcription	Fetal Intestine Large	intestine
12	chr15:79272400-79280200	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:79272400-79286400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:79272600-79280000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:79274000-79279400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:79275200-79280000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr15:79276000-79279600	Weak transcription	Fetal Muscle Leg	muscle
18	chr15:79276200-79280000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:79276200-79280200	Weak transcription	Placenta	Placenta
20	chr15:79276200-79280400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:79276200-79280600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:79276200-79280600	Weak transcription	Lung	lung
23	chr15:79276400-79279600	Weak transcription	GM12878-XiMat	blood
24	chr15:79276400-79280000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr15:79276400-79280000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr15:79276400-79280200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:79276400-79280200	Weak transcription	Adipose Nuclei	Adipose
28	chr15:79276400-79280200	Weak transcription	HSMM	muscle
29	chr15:79276400-79280400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:79276400-79288600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:79276400-79309200	Weak transcription	Right Atrium	heart
32	chr15:79276600-79280200	Weak transcription	HSMMtube	muscle
33	chr15:79277200-79280200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr15:79277400-79278800	Enhancers	HepG2	liver
35	chr15:79277400-79280400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr15:79277400-79282000	Weak transcription	Brain Angular Gyrus	brain
37	chr15:79277600-79284000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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