Variant report

Variant	rs28371965
Chromosome Location	chr7:97477179-97477180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1049674	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1229569	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17345286	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1974562	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2394762	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28393117	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28576085	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28625414	0.85[EUR][1000 genomes]
rs28756005	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2894138	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv428178	chr7:97402756-97648029	Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758124	chr7:97476284-97648029	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2759546	chr7:97476284-97648029	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97472800-97483000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:97473000-97480800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:97473400-97480800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:97474400-97480800	Weak transcription	Brain Germinal Matrix	brain
5	chr7:97474800-97482600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:97475000-97492800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:97476000-97480800	Weak transcription	Primary B cells from cord blood	blood
8	chr7:97477000-97477200	Enhancers	Primary hematopoietic stem cells	blood
9	chr7:97477000-97480600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:97477000-97481200	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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