Variant report

Variant	rs28372523
Chromosome Location	chr5:58580437-58580438
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10077993	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10472101	0.81[ASN][1000 genomes]
rs10472102	0.81[ASN][1000 genomes]
rs10491353	0.88[ASN][1000 genomes]
rs11955452	0.86[ASN][1000 genomes]
rs11956680	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12653844	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12655617	0.80[ASN][1000 genomes]
rs12658554	0.89[ASN][1000 genomes]
rs13359998	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1374028	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4700335	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58572000-58582800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:58572200-58583000	Weak transcription	Left Ventricle	heart
3	chr5:58573400-58583400	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:58573600-58582800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:58573600-58583000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:58573600-58583000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:58573800-58581400	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:58574200-58590200	Weak transcription	Right Atrium	heart
9	chr5:58574800-58582800	Weak transcription	Psoas Muscle	Psoas
10	chr5:58575400-58581800	Weak transcription	HUVEC	blood vessel
11	chr5:58580200-58581400	Weak transcription	Hela-S3	cervix
12	chr5:58580400-58581400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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