Variant report

Variant	rs28373750
Chromosome Location	chr16:81475708-81475709
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	UBTF	chr16:81475693-81475824	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81475472..81478406-chr16:81671837..81673759,2	MCF-7	breast:

Variant related genes	Relation type
CMIP	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28448863	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	esv34108	chr16:81469090-81510471	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81471800-81477000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr16:81472000-81476000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr16:81472200-81476200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr16:81472200-81476600	Weak transcription	Fetal Thymus	thymus
5	chr16:81472400-81477000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr16:81472800-81476000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr16:81473000-81475800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr16:81473000-81477000	Weak transcription	Dnd41	blood
9	chr16:81474000-81477200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr16:81474000-81477400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr16:81474400-81477600	Weak transcription	Right Atrium	heart
12	chr16:81474600-81476400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr16:81474800-81477600	Weak transcription	Fetal Lung	lung
14	chr16:81474800-81477600	Weak transcription	Spleen	Spleen
15	chr16:81475000-81476000	Weak transcription	Stomach Mucosa	stomach
16	chr16:81475000-81476400	Enhancers	A549	lung
17	chr16:81475000-81476800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr16:81475000-81477400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr16:81475200-81477200	Weak transcription	NHEK	skin
20	chr16:81475200-81477400	Weak transcription	Ovary	ovary
21	chr16:81475200-81477600	Weak transcription	Esophagus	oesophagus
22	chr16:81475400-81476400	Bivalent Enhancer	K562	blood
23	chr16:81475400-81477400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr16:81475600-81476200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr16:81475600-81476800	Weak transcription	Placenta	Placenta
26	chr16:81475600-81477000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr16:81475600-81477000	Bivalent Enhancer	HepG2	liver
28	chr16:81475600-81477400	Enhancers	HSMMtube	muscle

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