Variant report

Variant	rs2837403
Chromosome Location	chr21:41429463-41429464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10470191	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2222999	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2410204	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2410205	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2837381	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2837385	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2837393	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2837395	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2837398	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2837399	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2837401	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2837404	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4239808	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4816672	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8131708	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8133326	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913745	chr21:41423346-41473566	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41420800-41435600	Weak transcription	Aorta	Aorta
2	chr21:41421800-41435400	Weak transcription	Right Atrium	heart
3	chr21:41426800-41437000	Weak transcription	Pancreas	Pancrea
4	chr21:41426800-41437800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr21:41426800-41445800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr21:41427600-41442400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr21:41428400-41430400	Enhancers	Fetal Brain Female	brain
8	chr21:41428600-41429800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr21:41428600-41431000	Enhancers	Fetal Brain Male	brain
10	chr21:41428800-41430200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr21:41429400-41429600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr21:41429400-41429600	Enhancers	Brain Anterior Caudate	brain
13	chr21:41429400-41430600	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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