Variant report

Variant	rs28374092
Chromosome Location	chr8:62608782-62608783
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:62605925..62608885-chr8:62622452..62624247,2	MCF-7	breast:
2	chr8:62560449..62562337-chr8:62608012..62610402,2	K562	blood:
3	chr8:62608231..62611173-chr8:62624445..62626992,3	K562	blood:
4	chr8:62607580..62609927-chr8:62611220..62613385,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10087488	1.00[AMR][1000 genomes]
rs10094823	1.00[AMR][1000 genomes]
rs10096419	1.00[AMR][1000 genomes]
rs10096503	1.00[AMR][1000 genomes]
rs10098405	1.00[AMR][1000 genomes]
rs10099005	1.00[AMR][1000 genomes]
rs10099587	1.00[AMR][1000 genomes]
rs10100762	1.00[AMR][1000 genomes]
rs10101335	1.00[AMR][1000 genomes]
rs10104313	1.00[AMR][1000 genomes]
rs10104459	1.00[AMR][1000 genomes]
rs10108389	1.00[AMR][1000 genomes]
rs10113315	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17804195	1.00[AMR][1000 genomes]
rs28408834	1.00[AMR][1000 genomes]
rs28460340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28491327	1.00[AMR][1000 genomes]
rs28550168	1.00[AMR][1000 genomes]
rs28562585	1.00[AMR][1000 genomes]
rs28582737	1.00[AMR][1000 genomes]
rs28664022	1.00[AMR][1000 genomes]
rs28667387	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28668164	1.00[AMR][1000 genomes]
rs28670423	1.00[AMR][1000 genomes]
rs28723591	1.00[AMR][1000 genomes]
rs28831834	1.00[AMR][1000 genomes]
rs9298054	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027742	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv539633	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv890950	chr8:62517963-62617027	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62534000-62612400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:62579400-62623000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:62590800-62612800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:62595600-62609200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:62596400-62612400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr8:62597800-62612400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:62599800-62608800	Enhancers	Osteobl	bone
8	chr8:62600800-62612200	Weak transcription	Primary T cells from cord blood	blood
9	chr8:62601600-62611000	Weak transcription	Colonic Mucosa	Colon
10	chr8:62602200-62608800	Enhancers	NHDF-Ad	bronchial
11	chr8:62602800-62612400	Weak transcription	Brain Substantia Nigra	brain
12	chr8:62603000-62609400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:62603000-62609600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr8:62603000-62611200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:62603000-62612400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr8:62603000-62612400	Weak transcription	Aorta	Aorta
17	chr8:62603000-62612400	Weak transcription	HSMM	muscle
18	chr8:62603000-62612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:62603000-62612600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:62603000-62612800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:62603000-62612800	Weak transcription	Brain Hippocampus Middle	brain
22	chr8:62603000-62613600	Weak transcription	Fetal Lung	lung
23	chr8:62603200-62609400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr8:62603200-62610600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr8:62603200-62610800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:62604200-62611200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:62604200-62614000	Transcr. at gene 5' and 3'	A549	lung
28	chr8:62604400-62610600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:62604600-62612400	Weak transcription	Fetal Heart	heart
30	chr8:62605400-62612400	Enhancers	K562	blood
31	chr8:62605800-62612400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr8:62605800-62612400	Weak transcription	Spleen	Spleen
33	chr8:62605800-62612600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr8:62605800-62612800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr8:62606000-62609800	Weak transcription	HepG2	liver
36	chr8:62606000-62612600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr8:62606000-62613000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr8:62606400-62608800	Enhancers	Right Ventricle	heart
39	chr8:62606800-62609000	Enhancers	Colon Smooth Muscle	Colon
40	chr8:62606800-62611200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:62606800-62611400	Weak transcription	NH-A	brain
42	chr8:62607000-62610000	Weak transcription	Ovary	ovary
43	chr8:62607000-62610800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr8:62607000-62612800	Weak transcription	HMEC	breast
45	chr8:62607200-62609400	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr8:62607200-62609800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr8:62607200-62610800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr8:62607200-62619000	Weak transcription	NHEK	skin
49	chr8:62607400-62609000	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr8:62607400-62609200	Enhancers	Monocytes-CD14+_RO01746	blood

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